Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BW732_RS06420 Genome accession   NZ_CP019609
Coordinates   1337845..1338354 (+) Length   169 a.a.
NCBI ID   WP_077275976.1    Uniprot ID   -
Organism   Vagococcus penaei strain CD276T     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1332845..1343354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BW732_RS06395 (BW732_06470) - 1333312..1334205 (+) 894 WP_077275971.1 SDR family oxidoreductase -
  BW732_RS06400 (BW732_06475) - 1334274..1335035 (-) 762 WP_077275972.1 class I SAM-dependent DNA methyltransferase -
  BW732_RS06405 (BW732_06480) - 1335182..1335385 (-) 204 WP_077275973.1 hypothetical protein -
  BW732_RS06410 (BW732_06485) - 1335555..1336859 (-) 1305 WP_077275974.1 DUF3329 domain-containing protein -
  BW732_RS06415 (BW732_06490) rpsF 1337503..1337802 (+) 300 WP_077275975.1 30S ribosomal protein S6 -
  BW732_RS06420 (BW732_06495) ssb 1337845..1338354 (+) 510 WP_077275976.1 single-stranded DNA-binding protein Machinery gene
  BW732_RS06425 (BW732_06500) rpsR 1338376..1338618 (+) 243 WP_077275977.1 30S ribosomal protein S18 -
  BW732_RS06430 (BW732_06505) rplI 1338759..1339211 (+) 453 WP_077275978.1 50S ribosomal protein L9 -
  BW732_RS06435 (BW732_06510) dnaB 1339234..1340598 (+) 1365 WP_077275979.1 replicative DNA helicase -
  BW732_RS06440 (BW732_06515) - 1340718..1342010 (+) 1293 WP_077275980.1 adenylosuccinate synthase -
  BW732_RS06445 (BW732_06520) - 1342082..1342957 (+) 876 WP_077275981.1 DegV family protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 19149.97 Da        Isoelectric Point: 4.9942

>NTDB_id=216818 BW732_RS06420 WP_077275976.1 1337845..1338354(+) (ssb) [Vagococcus penaei strain CD276T]
MINNVVLVGRLTKDPDLRFTSNGSAVASFTLAVNRNFTNHSGEREADFINCVIWRKPAETLANYARKGTLLGVVGRIQTR
NYENQQGQRVYVTEVVCENFQLLESKNASEKRQQHSGDFNSNFSQDQNNQSFEQPSFSSKNDMPNFDRNSDPFEGSSQKI
DISDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=216818 BW732_RS06420 WP_077275976.1 1337845..1338354(+) (ssb) [Vagococcus penaei strain CD276T]
ATGATTAATAATGTGGTGTTAGTCGGAAGACTTACTAAAGATCCAGATTTACGTTTTACGTCAAATGGATCAGCTGTTGC
CTCGTTTACTTTGGCAGTTAACCGTAATTTCACTAATCATAGTGGAGAACGCGAAGCTGACTTTATTAATTGTGTTATCT
GGAGAAAACCTGCTGAAACACTTGCTAATTATGCTCGTAAGGGTACTTTATTAGGTGTGGTTGGTCGGATTCAAACCAGA
AATTATGAAAATCAACAAGGTCAACGTGTTTATGTGACAGAAGTAGTATGCGAAAACTTCCAATTATTAGAGTCTAAAAA
TGCGTCTGAAAAAAGACAGCAACATAGTGGCGATTTTAATAGTAATTTTTCTCAAGACCAAAATAATCAATCATTTGAAC
AACCTTCATTTTCAAGTAAAAATGACATGCCGAATTTTGATCGAAATAGTGATCCTTTTGAAGGTTCTTCACAAAAGATT
GATATCTCGGATGACGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.819

100

0.615
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.586
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.264

62.722

0.391

Multiple sequence alignment