Detailed information    

insolico Bioinformatically predicted

Overview

Name   lytF   Type   Regulator
Locus tag   CVO91_RS11990 Genome accession   NZ_CP024974
Coordinates   2374827..2375405 (-) Length   192 a.a.
NCBI ID   WP_044689397.1    Uniprot ID   -
Organism   Streptococcus suis strain CZ130302     
Function   cell lysis (predicted from homology)   
Cell lysis

Genomic Context

Location: 2369827..2380405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVO91_RS11975 (CVO91_11975) - 2371288..2372229 (-) 942 WP_002939863.1 LacI family DNA-binding transcriptional regulator -
  CVO91_RS11980 (CVO91_11980) - 2372500..2374350 (-) 1851 WP_002939861.1 LPXTG cell wall anchor domain-containing protein -
  CVO91_RS11985 (CVO91_11985) - 2374536..2374805 (-) 270 Protein_2265 amino acid ABC transporter ATP-binding protein -
  CVO91_RS11990 (CVO91_11990) lytF 2374827..2375405 (-) 579 WP_044689397.1 CHAP domain-containing protein Regulator
  CVO91_RS11995 (CVO91_11995) - 2375730..2377106 (-) 1377 WP_099778136.1 PTS transporter subunit EIIC -
  CVO91_RS12000 (CVO91_12000) - 2377150..2377593 (-) 444 WP_024379336.1 DUF3284 domain-containing protein -
  CVO91_RS12005 (CVO91_12005) - 2377630..2377962 (-) 333 WP_099778135.1 PTS lactose/cellobiose transporter subunit IIA -
  CVO91_RS12010 (CVO91_12010) - 2377964..2378275 (-) 312 WP_029174132.1 PTS sugar transporter subunit IIB -
  CVO91_RS12015 (CVO91_12015) - 2378288..2380282 (-) 1995 WP_099778134.1 PRD domain-containing protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 20066.63 Da        Isoelectric Point: 6.4608

>NTDB_id=215860 CVO91_RS11990 WP_044689397.1 2374827..2375405(-) (lytF) [Streptococcus suis strain CZ130302]
MSYQMIKKQFKLGLFTALIGNLLWSGMVNVSADDTVISDSPTVSALTKKVEAAKKAAKAAAAAKAALATNMVSEVAVEYT
ANTYPAGQCTWGAKEMAPWVGNYWGNGGDWAASAAALGYEVGTTPKVGAIAVWTDGGYGHVAYVTDVAANGHIQVKESNY
GGVYYPSNVRGFFDPTTTSEGTVSYIYPPAGV

Nucleotide


Download         Length: 579 bp        

>NTDB_id=215860 CVO91_RS11990 WP_044689397.1 2374827..2375405(-) (lytF) [Streptococcus suis strain CZ130302]
ATGAGTTATCAAATGATAAAAAAACAATTCAAATTGGGACTGTTTACAGCCCTCATAGGAAATCTTTTATGGTCGGGAAT
GGTGAATGTCAGTGCAGATGACACAGTTATAAGCGATAGTCCGACAGTATCAGCGTTAACAAAAAAGGTTGAAGCTGCAA
AAAAAGCAGCCAAAGCTGCTGCCGCTGCAAAGGCTGCTTTGGCTACCAATATGGTGTCAGAGGTTGCTGTGGAATATACG
GCTAATACCTATCCAGCGGGTCAGTGTACTTGGGGTGCCAAAGAAATGGCTCCTTGGGTTGGAAACTATTGGGGTAATGG
TGGAGATTGGGCAGCTAGTGCGGCAGCGCTTGGATATGAAGTGGGAACGACTCCAAAAGTTGGCGCTATTGCTGTATGGA
CAGATGGAGGCTACGGTCATGTTGCCTATGTAACAGATGTGGCAGCTAACGGTCACATTCAAGTTAAGGAATCAAACTAT
GGTGGAGTATACTACCCAAGTAATGTCCGAGGTTTCTTTGATCCAACAACGACTAGCGAAGGAACAGTCAGCTATATTTA
CCCACCAGCTGGAGTATAA

Domains

Predicted by InterProScan.

CHAP domain (CHAP)

(81-159)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lytF Streptococcus gordonii strain NCTC7865

66.667

56.25

0.375
  lytF Streptococcus gordonii str. Challis substr. CH1

66.667

56.25

0.375

Multiple sequence alignment