Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   CVO91_RS00930 Genome accession   NZ_CP024974
Coordinates   142683..143090 (+) Length   135 a.a.
NCBI ID   WP_100664711.1    Uniprot ID   -
Organism   Streptococcus suis strain CZ130302     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 137683..148090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVO91_RS00905 (CVO91_00905) - 139084..139449 (+) 366 WP_004195575.1 DUF1033 family protein -
  CVO91_RS00910 (CVO91_00910) - 139484..140434 (-) 951 WP_100664709.1 S66 peptidase family protein -
  CVO91_RS00915 (CVO91_00915) comGA 140520..141470 (+) 951 WP_100664710.1 competence type IV pilus ATPase ComGA Machinery gene
  CVO91_RS00920 (CVO91_00920) comGB 141382..142419 (+) 1038 WP_050572090.1 competence type IV pilus assembly protein ComGB Machinery gene
  CVO91_RS00925 (CVO91_00925) comGC 142421..142702 (+) 282 WP_024377792.1 competence type IV pilus major pilin ComGC Machinery gene
  CVO91_RS00930 (CVO91_00930) comGD 142683..143090 (+) 408 WP_100664711.1 competence type IV pilus minor pilin ComGD Machinery gene
  CVO91_RS00935 (CVO91_00935) comGE 143062..143355 (+) 294 WP_044765771.1 competence type IV pilus minor pilin ComGE Machinery gene
  CVO91_RS00940 (CVO91_00940) comGF/cglF 143342..143776 (+) 435 WP_100664712.1 competence type IV pilus minor pilin ComGF Machinery gene
  CVO91_RS00945 (CVO91_00945) comGG 143754..144266 (+) 513 WP_100664713.1 competence type IV pilus minor pilin ComGG -
  CVO91_RS00950 (CVO91_00950) - 144494..146575 (+) 2082 WP_100664714.1 GBS Bsp-like repeat-containing protein -
  CVO91_RS00955 (CVO91_00955) - 146781..147911 (+) 1131 WP_100664715.1 ISAs1 family transposase -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 15378.62 Da        Isoelectric Point: 9.8653

>NTDB_id=215784 CVO91_RS00930 WP_100664711.1 142683..143090(+) (comGD) [Streptococcus suis strain CZ130302]
MLRRKNKAFTLFESLLTLLVVSFLAISLSGTVQTVFRSVQEEIFLWEFEAIYKDSQKLAASSRQKVNLAIGGQEVTNSYQ
AVEVPGNVEVLEEKNIKFEENGGNSSLTKIRFRLSRKTVTYQLYIGSGRYKKTEE

Nucleotide


Download         Length: 408 bp        

>NTDB_id=215784 CVO91_RS00930 WP_100664711.1 142683..143090(+) (comGD) [Streptococcus suis strain CZ130302]
ATGCTAAGGCGAAAAAATAAGGCTTTTACCCTATTTGAAAGCCTGCTGACCTTGTTGGTTGTCAGTTTTCTGGCAATCAG
CCTGTCGGGAACAGTACAAACGGTCTTTCGGTCTGTTCAGGAAGAAATTTTTCTCTGGGAATTTGAGGCCATCTATAAAG
ACAGTCAGAAATTGGCAGCCAGTTCCCGCCAAAAAGTGAACCTTGCTATCGGTGGACAGGAAGTTACAAATAGTTATCAG
GCTGTAGAGGTACCCGGAAATGTAGAGGTCTTAGAGGAGAAAAATATCAAATTTGAAGAAAATGGAGGAAATTCTTCCCT
GACCAAAATTCGTTTTCGGCTTAGTCGAAAAACAGTCACGTATCAATTATATATAGGGAGTGGTCGCTATAAGAAAACAG
AAGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Streptococcus mutans UA159

46.512

95.556

0.444
  comGD Streptococcus mutans UA140

46.512

95.556

0.444
  comGD Streptococcus gordonii str. Challis substr. CH1

47.244

94.074

0.444
  comGD/cglD Streptococcus pneumoniae Rx1

44.961

95.556

0.43
  comGD/cglD Streptococcus pneumoniae R6

44.961

95.556

0.43
  comGD/cglD Streptococcus pneumoniae D39

44.961

95.556

0.43
  comGD/cglD Streptococcus pneumoniae TIGR4

44.961

95.556

0.43
  comGD/cglD Streptococcus mitis SK321

44.186

95.556

0.422
  comGD/cglD Streptococcus mitis NCTC 12261

44.186

95.556

0.422
  comGD Lactococcus lactis subsp. cremoris KW2

40.625

94.815

0.385