Detailed information NTG0215711

Bioinformatically predicted

Overview

• Name: xerS
• Type: Machinery gene
• Locus tag: CV098_RS05660
• Genome accession: NZ_CP024958
• Coordinates: 1188981..1190051 (-)
• Length: 356 a.a.
• NCBI ID: WP_003131037.1
• Uniprot ID: Q9CG78
• Organism: Lactococcus lactis subsp. lactis strain G423
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1183981..1195051

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CV098_RS05645 (CV098_05645)	dprA	1184279..1185127 (+)	849	WP_012897825.1	DNA-processing protein DprA	Machinery gene
CV098_RS05650 (CV098_05650)	topA	1185389..1187521 (+)	2133	WP_017864498.1	type I DNA topoisomerase	-
CV098_RS05655 (CV098_05655)	trmFO	1187593..1188936 (+)	1344	WP_017864499.1	methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO	-
CV098_RS05660 (CV098_05660)	xerS	1188981..1190051 (-)	1071	WP_003131037.1	tyrosine recombinase XerS	Machinery gene
CV098_RS05665 (CV098_05665)	-	1190536..1190823 (-)	288	WP_017864500.1	hypothetical protein	-
CV098_RS05670 (CV098_05670)	xerS	1190907..1191962 (-)	1056	WP_017864501.1	tyrosine recombinase XerS	Machinery gene
CV098_RS05675 (CV098_05675)	-	1192743..1193252 (+)	510	WP_017864502.1	hypothetical protein	-
CV098_RS05680 (CV098_05680)	-	1193367..1193714 (-)	348	WP_017864503.1	helix-turn-helix transcriptional regulator	-
CV098_RS05685 (CV098_05685)	-	1194032..1194229 (+)	198	WP_017864504.1	hypothetical protein	-
CV098_RS12120 (CV098_05690)	-	1194317..1194589 (-)	273	WP_306471740.1	hypothetical protein	-

Sequence

Protein

• Length: 356 a.a.
• Molecular weight: 41397.21 Da
• Isoelectric Point: 9.6568

>NTDB_id=215711 CV098_RS05660 WP_003131037.1 1188981..1190051(-) (xerS) [Lactococcus lactis subsp. lactis strain G423]
MKREQLIQNIEKLKHIMPSYVLEYYQSKLTIPYSLNTLYEYLKEYERFFSWLVDSGVADVDKITDVSLSVLENLTKRDLE
SFILYLRERPRLNTRSTRYGVSQTTINRTLSALSSLYKYLTEEVENEDGEPYFYRNVMKKVQTKKKSETLASRAENIKGK
LFLGDETQGFLDYIDNEYEKTLSNRARSSFFKNKERDLAIIALILASGIRLSEAVNVDLRDLNLITMVVEVTRKGGKRDA
VPYAPFAKTYFERYLEVRSQRYKTTAKDTAFFVTLYRDVPSRIDPSSVEKLVAKYSQAFKVRVTPHKLRHTLATRLYAQT
NSQVLVSNQLGHASTQVTDLYTHIINEEQKNALDNL

Nucleotide

• Length: 1071 bp

>NTDB_id=215711 CV098_RS05660 WP_003131037.1 1188981..1190051(-) (xerS) [Lactococcus lactis subsp. lactis strain G423]
ATGAAACGTGAACAATTAATACAAAATATTGAAAAACTAAAACATATCATGCCTTCTTATGTTTTAGAATATTATCAATC
TAAACTTACTATTCCTTATAGTTTGAATACACTTTATGAATATCTTAAAGAATATGAACGTTTCTTTAGTTGGTTGGTCG
ATTCTGGAGTTGCTGATGTTGATAAGATAACTGATGTTTCCCTCTCTGTTTTAGAAAACTTAACTAAACGAGATTTGGAG
TCATTTATCCTCTATCTTAGGGAGAGACCCCGTTTAAATACGCGCTCTACTCGTTATGGGGTAAGTCAAACAACAATTAA
TCGTACTCTATCTGCTCTTTCTAGTCTTTATAAATACCTTACTGAAGAGGTTGAAAATGAAGATGGTGAGCCTTACTTCT
ATCGTAATGTTATGAAGAAGGTACAGACTAAGAAAAAATCCGAAACTTTAGCTTCTCGTGCTGAGAATATTAAAGGGAAG
CTTTTTTTGGGAGATGAAACTCAAGGTTTTCTTGACTATATTGATAATGAATATGAAAAAACATTATCAAATAGAGCTCG
TTCTAGTTTTTTCAAAAATAAAGAACGTGATTTAGCAATTATTGCACTTATTTTAGCCTCTGGTATTCGTCTTTCTGAGG
CAGTTAATGTAGATTTAAGAGATTTAAATCTTATTACTATGGTTGTTGAGGTGACTCGTAAAGGAGGAAAAAGGGATGCT
GTTCCTTATGCTCCTTTTGCCAAAACTTATTTTGAAAGATACTTGGAAGTACGAAGTCAACGTTATAAGACTACAGCGAA
AGATACGGCATTTTTTGTGACACTTTATAGAGATGTTCCTAGCCGAATAGATCCTTCTAGTGTTGAAAAATTAGTTGCTA
AATATTCTCAAGCTTTTAAAGTGCGAGTGACCCCTCACAAGCTTAGACATACACTTGCGACTCGACTTTATGCTCAAACA
AATTCTCAGGTATTGGTGAGCAATCAGTTAGGGCATGCTTCAACTCAAGTTACAGACCTTTATACTCATATTATCAATGA
AGAACAAAAAAATGCTCTAGATAATCTATAA

Domains

Predicted by InterProScan.

• Phage integrase family (Phage_integrase) (182-344)

• Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4) (33-122)

3D structure

• AlphaFold DB: Q9CG78

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xerS	Streptococcus pneumoniae R6	76.685	100	0.767