Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   BRW84_RS02975 Genome accession   NZ_CP019430
Coordinates   627522..628322 (-) Length   266 a.a.
NCBI ID   WP_005881549.1    Uniprot ID   C3XB40
Organism   Oxalobacter formigenes OXCC13     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 622522..633322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BRW84_RS02955 (BRW84_02960) tyrS 622961..624205 (+) 1245 WP_005881558.1 tyrosine--tRNA ligase -
  BRW84_RS02960 (BRW84_02965) - 624237..626504 (-) 2268 WP_005881556.1 RelA/SpoT family protein -
  BRW84_RS02965 (BRW84_02970) rpoZ 626583..626786 (-) 204 WP_005881554.1 DNA-directed RNA polymerase subunit omega -
  BRW84_RS02970 (BRW84_02975) gmk 626821..627474 (-) 654 WP_005881552.1 guanylate kinase -
  BRW84_RS02975 (BRW84_02980) comL 627522..628322 (-) 801 WP_005881549.1 outer membrane protein assembly factor BamD Machinery gene
  BRW84_RS02980 (BRW84_02985) - 628392..629420 (+) 1029 WP_005881547.1 RluA family pseudouridine synthase -
  BRW84_RS02985 (BRW84_02990) pgeF 629401..630156 (+) 756 WP_005881546.1 peptidoglycan editing factor PgeF -
  BRW84_RS02990 (BRW84_02995) rimO 630280..631671 (+) 1392 WP_005881544.1 30S ribosomal protein S12 methylthiotransferase RimO -
  BRW84_RS02995 (BRW84_03000) - 631668..632843 (+) 1176 WP_005881542.1 cystathionine beta-lyase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 30992.49 Da        Isoelectric Point: 8.8623

>NTDB_id=215711 BRW84_RS02975 WP_005881549.1 627522..628322(-) (comL) [Oxalobacter formigenes OXCC13]
MRKYLTILLACIIALSISACGLLPEKIDETASWPAGKLYREAKEELNSGNYEKAVEYFEKLEARYPFGIYAQQAQMDIAY
AYYRQNEQAQALAAAERFIKLHPNHPNIDYMYYLKGLINFNDRLGLLNFAFRQDLSERDPKAAQDAFDAFKVLVTRYPDS
VYAKDAMLRMKYLVTMLAKYEIHVAKYYYRRGAYLAAANRAQRTIKNYPESHVVEEALYIMAQSYKKLGLYDLSADAERV
FKQNYPDSKIPYGAADKKSDPWWQFW

Nucleotide


Download         Length: 801 bp        

>NTDB_id=215711 BRW84_RS02975 WP_005881549.1 627522..628322(-) (comL) [Oxalobacter formigenes OXCC13]
ATGCGCAAGTATTTAACCATCCTTCTGGCCTGCATTATCGCCCTATCCATATCCGCTTGTGGCTTGTTGCCTGAAAAAAT
AGATGAAACGGCTTCCTGGCCTGCAGGCAAATTGTATCGCGAAGCCAAAGAAGAATTAAACTCGGGCAATTACGAAAAAG
CCGTCGAATACTTCGAAAAGCTGGAAGCACGATATCCTTTCGGCATATACGCCCAGCAGGCCCAGATGGATATTGCCTAT
GCCTACTACCGCCAGAATGAACAGGCGCAGGCTTTGGCGGCAGCTGAACGTTTCATCAAACTGCACCCGAATCATCCAAA
CATCGATTATATGTATTATCTGAAAGGCCTGATCAATTTCAACGATCGTTTGGGCCTTCTGAATTTCGCATTCCGGCAGG
ATTTGTCGGAACGTGACCCGAAAGCGGCACAGGATGCATTCGATGCGTTCAAGGTTCTGGTGACCCGTTATCCGGACAGC
GTCTATGCCAAAGATGCCATGCTCCGCATGAAATATCTGGTTACCATGCTCGCCAAGTATGAAATTCACGTTGCCAAATA
TTATTACCGGCGTGGTGCCTATCTGGCAGCGGCAAACCGTGCACAACGCACGATCAAGAATTACCCGGAATCCCATGTCG
TCGAAGAAGCGCTCTACATCATGGCACAGTCATACAAAAAACTGGGGTTGTATGACCTGAGTGCTGACGCGGAACGCGTC
TTCAAACAGAACTATCCCGACAGCAAGATCCCTTATGGCGCTGCGGATAAAAAATCCGATCCCTGGTGGCAATTCTGGTA
A

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(35-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C3XB40

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

48.12

100

0.481
  comL Neisseria gonorrhoeae MS11

47.529

98.872

0.47

Multiple sequence alignment