Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LFZ43_RS05400 Genome accession   NZ_CP019417
Coordinates   1110817..1111422 (+) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Wandsworth str. SA20092095     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1105817..1116422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LFZ43_RS05380 (LFZ43_05380) - 1106212..1107972 (-) 1761 WP_076741510.1 Lon protease family protein -
  LFZ43_RS05385 (LFZ43_05385) matP 1108158..1108610 (+) 453 WP_000877172.1 macrodomain Ter protein MatP -
  LFZ43_RS05390 (LFZ43_05390) ompA 1108682..1109734 (-) 1053 WP_001670727.1 porin OmpA -
  LFZ43_RS05395 (LFZ43_05395) sulA 1110091..1110600 (-) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  LFZ43_RS05400 (LFZ43_05400) sxy/tfoX 1110817..1111422 (+) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  LFZ43_RS05405 (LFZ43_05405) yccS 1111409..1113562 (-) 2154 WP_000950861.1 YccS family putative transporter -
  LFZ43_RS05410 (LFZ43_05410) - 1113581..1114027 (-) 447 WP_001261222.1 YccF domain-containing protein -
  LFZ43_RS05415 (LFZ43_05415) helD 1114151..1116205 (+) 2055 WP_076741511.1 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=215581 LFZ43_RS05400 WP_001202375.1 1110817..1111422(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Wandsworth str. SA20092095]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=215581 LFZ43_RS05400 WP_001202375.1 1110817..1111422(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Wandsworth str. SA20092095]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTCTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTCATGAAATGCGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment