Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB10   Type   Machinery gene
Locus tag   CV728_RS04130 Genome accession   NZ_CP024948
Coordinates   852607..853842 (+) Length   411 a.a.
NCBI ID   WP_145817265.1    Uniprot ID   -
Organism   Helicobacter pylori strain B140     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 847607..858842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV728_RS04115 (CV728_04130) - 848025..849959 (+) 1935 WP_145818275.1 type IA DNA topoisomerase -
  CV728_RS08810 - 849959..850087 (+) 129 WP_265473275.1 hypothetical protein -
  CV728_RS04120 (CV728_04135) - 850089..851075 (+) 987 WP_145817263.1 virB8 family protein -
  CV728_RS04125 (CV728_04140) - 851075..852610 (+) 1536 Protein_791 TrbG/VirB9 family P-type conjugative transfer protein -
  CV728_RS04130 (CV728_04145) comB10 852607..853842 (+) 1236 WP_145817265.1 DNA type IV secretion system protein ComB10 Machinery gene
  CV728_RS04135 (CV728_04150) - 853912..854205 (+) 294 WP_145817267.1 hypothetical protein -
  CV728_RS04140 (CV728_04155) - 854198..854461 (+) 264 WP_145818277.1 hypothetical protein -
  CV728_RS04145 (CV728_04160) - 854458..854757 (+) 300 WP_001942121.1 hypothetical protein -
  CV728_RS04150 (CV728_04165) - 854757..855698 (+) 942 WP_145817269.1 ATPase, T2SS/T4P/T4SS family -
  CV728_RS04155 (CV728_04170) - 855695..856150 (+) 456 WP_145817271.1 mobilization protein -
  CV728_RS04160 (CV728_04175) - 856147..856437 (+) 291 WP_000159808.1 hypothetical protein -
  CV728_RS04165 (CV728_04180) - 856438..856995 (+) 558 WP_145817273.1 hypothetical protein -
  CV728_RS08545 - 856996..858724 (+) 1729 Protein_800 type IV secretory system conjugative DNA transfer family protein -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 46519.65 Da        Isoelectric Point: 10.0578

>NTDB_id=215342 CV728_RS04130 WP_145817265.1 852607..853842(+) (comB10) [Helicobacter pylori strain B140]
MKKLLLLLEHKIVKIGLIIVIVLVGFFLFYEQEIKEKAVNVSQGKFPTSSYLFQAYEGIKNKIDTINEVKPNDETKSVNE
NIEKTQKDLDDFNALVQKLPNLPKDFNKTLIKPQSPSFNYNTANEEEKTRLVILASRISSQKETQPPTSIKNSVSHIKSK
EKRELEKEYGSSGFKNFKRKNIASSENKLLRTITADRMIPAILITPISSEIGGSKIVAQVESDIYATMGRAVLIPKGSRA
IGYYNSNNKIGEYRLEIAWNRIITPQGVNIILSDAKGADVKGYNGMIGTLHNKYWERYGIPLSLSTLSNGLLIGLTSGLT
EAMKNKRGGFNQNYFGDYMMMQMTRQTGISLNNIIAQIMRDQIRIKPIITIREGSHIFISPNTDIWFPIPKNNEVLAKFF
NEEKEQNNDTK

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=215342 CV728_RS04130 WP_145817265.1 852607..853842(+) (comB10) [Helicobacter pylori strain B140]
ATGAAAAAACTTCTTTTACTCTTGGAGCATAAGATCGTAAAAATTGGATTAATTATTGTGATTGTGTTAGTGGGTTTTTT
TCTTTTTTATGAACAAGAAATCAAAGAAAAAGCTGTTAATGTTTCTCAAGGTAAATTCCCTACTTCGTCTTATTTGTTTC
AAGCTTACGAAGGCATTAAGAATAAAATAGATACTATCAATGAAGTGAAACCAAACGATGAAACTAAAAGCGTTAATGAG
AATATAGAAAAAACACAAAAAGATTTAGATGATTTTAATGCTCTAGTGCAAAAACTACCAAATTTGCCTAAGGATTTTAA
TAAAACGCTTATTAAACCACAAAGTCCATCCTTCAACTACAATACCGCTAACGAAGAAGAAAAAACCCGCCTTGTGATTT
TAGCGTCTCGTATTAGCAGTCAAAAAGAAACACAGCCTCCAACCTCTATAAAAAATAGTGTTTCTCACATAAAATCCAAA
GAAAAACGAGAACTTGAAAAAGAATACGGCTCTAGCGGGTTTAAAAATTTTAAAAGAAAAAATATAGCGAGCAGTGAAAA
CAAACTTTTGAGAACGATTACAGCTGACAGAATGATCCCAGCCATTCTGATCACTCCTATTAGCAGTGAAATAGGGGGGA
GTAAGATAGTCGCTCAAGTGGAGAGTGATATATACGCAACGATGGGTAGAGCGGTTTTAATCCCTAAAGGGAGTAGAGCC
ATAGGCTATTACAACTCTAATAACAAAATAGGAGAATACCGCTTAGAAATTGCTTGGAACAGGATAATCACGCCACAAGG
GGTCAATATCATACTAAGCGATGCTAAGGGAGCTGATGTCAAGGGCTATAACGGCATGATAGGCACACTCCATAACAAAT
ATTGGGAACGCTATGGCATTCCTTTATCCTTAAGCACCTTGTCAAACGGGCTACTCATAGGACTTACTAGCGGTCTTACC
GAAGCGATGAAAAACAAAAGAGGCGGTTTTAACCAAAACTATTTTGGAGATTACATGATGATGCAAATGACAAGACAAAC
TGGTATCAGCCTAAATAACATTATCGCTCAAATCATGCGAGATCAAATCAGGATTAAGCCCATTATCACTATTAGAGAAG
GAAGCCATATCTTTATTAGTCCTAATACGGATATTTGGTTTCCTATCCCTAAAAACAATGAAGTCTTAGCGAAATTTTTT
AATGAAGAAAAGGAGCAAAACAATGATACAAAATAG

Domains

Predicted by InterProScan.

Bacterial conjugation TrbI-like protein (TrbI)

(192-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB10 Helicobacter pylori P1

46.599

96.594

0.45