Detailed information NTG0213025

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: BVV18_RS20000
• Genome accession: NZ_CP019087
• Coordinates: 4193641..4195161 (+)
• Length: 506 a.a.
• NCBI ID: WP_101807260.1
• Uniprot ID: -
• Organism: Xanthomonas oryzae pv. oryzae strain MAI95
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IScluster/Tn	4195242..4196040	4193641..4195161	flank	81

Gene organization within MGE regions

Location: 4193641..4196040

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BVV18_RS20000 (BVV18_20265)	comM	4193641..4195161 (+)	1521	WP_101807260.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
BVV18_RS20005	-	4195769..4195770 (-)	2	WP_101807261.1	IS5 family transposase	-

Sequence

Protein

• Length: 506 a.a.
• Molecular weight: 54002.77 Da
• Isoelectric Point: 8.0973

>NTDB_id=213025 BVV18_RS20000 WP_101807260.1 4193641..4195161(+) (comM) [Xanthomonas oryzae pv. oryzae strain MAI95]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQMVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKEGGR
FDLPIALGILAASGQIDRQALADYEFLGELALTGELRGIDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVEAFTARTL
LEVCATLDGSQKAPAAELAVQALGARALPDMADVRGQPHARRALEIAAAGGHHLLLIGSPGCGKTLLASRLPGLLPEASE
AEALETAAITSTSGRGLDLARWRQRPYRAPHHTASAVALVGGGTLPRPGEISLAHNGVLFLDELPEWQRQTLEVLREPLE
SGLVTISRAARSVDFPARFQLVAAMNPCPCGWAGDGSGRCRCSNDSIRRYRSRISGPLLDRIDLHVEVPRLPPQALRSGN
LGEDSASVRCRVVAARQRQLARGALPNAQLDQPDTDRHCRLQHDDQVLLERAIEHLQLSARSMHRILRVARTIADLDDSA
DIATRHLTEAIGYRKLDRALSAASAG

Nucleotide

• Length: 1521 bp

>NTDB_id=213025 BVV18_RS20000 WP_101807260.1 4193641..4195161(+) (comM) [Xanthomonas oryzae pv. oryzae strain MAI95]
ATGAGTCTGGCGTTGGTGCACAGCCGTGCCCGCGTGGGGGTGCACGCGCCCGAAGTTCGGGTGGAAGTGCATCTCTCCGG
CGGTCTCCCCTCCACCCAGATGGTGGGCCTGCCCGAAGCGGCAGTGCGCGAATCGCGCGAACGCGTACGTGCCGCGCTGC
TGTGCGCGCAGTTCGAATTCCCCGCACGGCGCATTACCATCAATCTGGCGCCGGCCGATCTGCCTAAGGAAGGCGGACGG
TTCGATTTGCCGATCGCCCTCGGCATCCTGGCTGCCAGCGGGCAAATCGACCGCCAGGCCCTGGCCGATTACGAATTCCT
CGGCGAGCTTGCGCTTACCGGCGAGCTGCGCGGCATCGATGGCGTGCTGCCCGCGGCGCTGGCGGCCGCGCAGGCAGGGC
GACGGCTGATCGTACCGCTTGCCAACGGTGCCGAAGCGGCGATTGCCGGGCACGTCGAAGCCTTCACCGCACGCACGCTG
CTTGAGGTGTGCGCGACGCTCGACGGCAGCCAGAAAGCACCTGCAGCCGAATTGGCGGTGCAGGCGCTCGGCGCCCGTGC
CCTGCCCGACATGGCCGATGTGCGCGGGCAACCGCACGCCCGCCGCGCGCTGGAGATCGCCGCTGCTGGTGGGCATCATC
TCCTTCTGATCGGCAGCCCTGGCTGCGGCAAGACCCTGTTGGCCTCGCGCCTGCCTGGGCTATTGCCCGAAGCCAGCGAA
GCCGAAGCGCTGGAAACCGCGGCCATTACCTCCACCAGCGGCCGCGGACTGGATCTGGCCCGCTGGCGGCAGCGGCCCTA
CCGGGCTCCTCACCACACCGCCAGCGCAGTCGCCTTGGTTGGCGGTGGCACGCTTCCGCGCCCCGGCGAGATCTCGCTGG
CCCACAACGGTGTCTTGTTTCTGGACGAGTTGCCCGAGTGGCAACGGCAGACACTCGAGGTGCTGCGCGAGCCGTTGGAA
TCGGGTCTGGTCACGATCTCACGCGCGGCGCGCAGCGTCGACTTCCCTGCACGCTTCCAGCTGGTCGCTGCGATGAACCC
ATGCCCATGCGGTTGGGCAGGCGACGGCAGCGGGCGCTGCCGCTGCAGCAACGACAGCATCCGCCGCTATCGCAGCCGTA
TCTCCGGCCCGTTGCTGGACCGCATCGATCTGCATGTCGAAGTGCCACGCCTACCACCGCAAGCGCTGCGTAGCGGCAAC
CTCGGCGAGGACAGCGCCAGCGTGCGTTGCCGCGTGGTCGCCGCGCGGCAACGCCAGCTTGCGCGCGGAGCGCTGCCCAA
TGCGCAACTGGATCAGCCCGACACCGACCGCCATTGCCGTCTGCAGCACGACGACCAAGTGCTGCTCGAGCGCGCCATCG
AACACCTGCAGCTGTCTGCGCGCTCGATGCATCGCATCCTGCGCGTGGCACGCACCATCGCCGATCTCGACGACAGCGCG
GACATTGCCACGCGCCATCTCACCGAAGCGATCGGCTATCGCAAACTGGATCGCGCACTGAGTGCCGCCAGCGCGGGGTA
G

Domains

Predicted by InterproScan.

• Subunit ChlI of Mg-chelatase (ChlI) (21-142)

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (190-394)

• Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C) (402-494)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Vibrio cholerae strain A1552	56.719	100	0.567
comM	Haemophilus influenzae Rd KW20	54.99	100	0.555
comM	Vibrio campbellii strain DS40M4	54.15	100	0.542
comM	Glaesserella parasuis strain SC1401	54.043	100	0.541
comM	Legionella pneumophila str. Paris	51.911	98.221	0.51
comM	Legionella pneumophila strain ERS1305867	51.911	98.221	0.51
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	45.866	100	0.46