Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   PA2960 Genome accession   NC_002516
Coordinates   3319674..3320030 (-) Length   118 a.a.
NCBI ID   NP_251650.1    Uniprot ID   G3XCZ3
Organism   Pseudomonas aeruginosa PAO1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3314674..3325030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PA2955 - 3315057..3315689 (-) 633 NP_251645.1 hypothetical protein -
  PA2956 - 3315754..3316650 (-) 897 NP_251646.1 hypothetical protein -
  PA2957 - 3316800..3317438 (-) 639 NP_251647.1 transcriptional regulator -
  PA2958 - 3317524..3318657 (+) 1134 NP_251648.1 hypothetical protein -
  PA2959 - 3318883..3319659 (-) 777 NP_251649.1 hypothetical protein -
  PA2960 pilZ 3319674..3320030 (-) 357 NP_251650.1 type 4 fimbrial biogenesis protein PilZ Machinery gene
  PA2961 holB 3320064..3321050 (-) 987 NP_251651.1 DNA polymerase III subunit delta' -
  PA2962 tmk 3321043..3321675 (-) 633 NP_251652.1 thymidylate kinase -
  PA2963 - 3321704..3322753 (-) 1050 NP_251653.1 hypothetical protein -
  PA2964 pabC 3322759..3323574 (-) 816 NP_251654.1 4-amino-4-deoxychorismate lyase -
  PA2965 fabF1 3323574..3324818 (-) 1245 NP_251655.1 3-oxoacyl-ACP synthase -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 12903.98 Da        Isoelectric Point: 9.9969

>NTDB_id=21275 PA2960 NP_251650.1 3319674..3320030(-) (pilZ) [Pseudomonas aeruginosa PAO1]
MSLPPNLGPRNGILSLTIKDKSVLYAAYMPFIRNGGLFIPTNKNYKLGDEVFMLLNLMEEPEKIPVAGKVVWITPKGAQG
NRAAGIGVQFNDGDNTARNKIETYLAGALKSDRPTHTM

Nucleotide


Download         Length: 357 bp        

>NTDB_id=21275 PA2960 NP_251650.1 3319674..3320030(-) (pilZ) [Pseudomonas aeruginosa PAO1]
ATGAGTTTGCCACCCAATCTGGGGCCGCGTAACGGCATCCTGTCCTTGACCATCAAGGACAAGTCCGTGCTGTACGCCGC
CTACATGCCGTTCATCAGGAACGGCGGGCTGTTCATTCCCACCAACAAGAACTACAAGCTCGGCGACGAAGTCTTCATGC
TGCTCAACCTGATGGAAGAGCCGGAGAAGATCCCGGTGGCCGGCAAGGTCGTCTGGATCACCCCGAAGGGCGCCCAGGGC
AACCGTGCGGCTGGCATCGGCGTGCAGTTCAACGACGGTGACAACACCGCCCGCAACAAGATCGAAACCTACCTGGCCGG
GGCGCTGAAGTCGGACCGGCCGACCCACACGATGTAA

Domains

Predicted by InterProScan.

PilZ domain (PilZ)

(17-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G3XCZ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

49.074

91.525

0.449
  pilZ Legionella pneumophila strain ERS1305867

49.074

91.525

0.449

Multiple sequence alignment