Detailed information
Bioinformatically predicted
Overview
| Name | pilL-C | Type | Machinery gene |
| Locus tag | CSW01_RS07020 | Genome accession | NZ_CP024162 |
| Coordinates | 1485185..1485565 (-) | Length | 126 a.a. |
| NCBI ID | WP_000045526.1 | Uniprot ID | Q6BBL2 |
| Organism | Vibrio cholerae strain E7946 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1480185..1490565
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CSW01_RS07000 (CSW01_06980) | - | 1480351..1481757 (+) | 1407 | WP_000545341.1 | MDR family MFS transporter | - |
| CSW01_RS07005 (CSW01_06985) | - | 1481913..1483427 (+) | 1515 | WP_000411504.1 | cryptochrome/deoxyribodipyrimidine photo-lyase family protein | - |
| CSW01_RS07010 (CSW01_06990) | - | 1483573..1483887 (+) | 315 | WP_000312387.1 | DMT family transporter | - |
| CSW01_RS07015 (CSW01_06995) | - | 1483942..1485177 (-) | 1236 | WP_000621946.1 | methyl-accepting chemotaxis protein | - |
| CSW01_RS07020 (CSW01_07000) | pilL-C | 1485185..1485565 (-) | 381 | WP_000045526.1 | response regulator | Machinery gene |
| CSW01_RS07025 (CSW01_07005) | - | 1485558..1485818 (-) | 261 | WP_001143862.1 | hypothetical protein | - |
| CSW01_RS07030 (CSW01_07010) | - | 1485808..1488081 (-) | 2274 | WP_001178898.1 | chemotaxis protein CheA | - |
| CSW01_RS07035 (CSW01_07015) | - | 1488090..1488461 (-) | 372 | WP_000757478.1 | response regulator | - |
| CSW01_RS07040 (CSW01_07020) | - | 1488461..1489306 (-) | 846 | WP_001002907.1 | CheR family methyltransferase | - |
| CSW01_RS07045 (CSW01_07025) | - | 1489317..1489973 (-) | 657 | WP_000974695.1 | HEAT repeat domain-containing protein | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13674.04 Da Isoelectric Point: 9.8959
>NTDB_id=211314 CSW01_RS07020 WP_000045526.1 1485185..1485565(-) (pilL-C) [Vibrio cholerae strain E7946]
MSKSILIVDDSSTVLMSVDAMLSKLGFQVEKAKDGVEAETRLKGGLKVNLIITDINMPRMDGIELISKIRAIASYRFTPI
LVLTTEQEQAKRNEARAKGATGYLVKPVTGDQLKAVIQQVLPGSIS
MSKSILIVDDSSTVLMSVDAMLSKLGFQVEKAKDGVEAETRLKGGLKVNLIITDINMPRMDGIELISKIRAIASYRFTPI
LVLTTEQEQAKRNEARAKGATGYLVKPVTGDQLKAVIQQVLPGSIS
Nucleotide
Download Length: 381 bp
>NTDB_id=211314 CSW01_RS07020 WP_000045526.1 1485185..1485565(-) (pilL-C) [Vibrio cholerae strain E7946]
ATGTCTAAAAGCATTCTGATTGTTGATGACTCTAGTACTGTTCTTATGAGTGTCGATGCCATGCTCTCTAAACTGGGTTT
CCAAGTCGAGAAAGCAAAAGATGGCGTTGAAGCAGAAACTCGACTCAAAGGTGGTCTAAAAGTCAACCTCATCATTACCG
ACATCAATATGCCTCGTATGGATGGTATTGAGTTGATTAGCAAAATTCGTGCGATTGCTTCATATCGCTTTACCCCAATT
TTAGTGCTCACTACAGAACAAGAACAAGCCAAACGCAATGAGGCTCGCGCCAAAGGTGCAACAGGTTATTTAGTTAAGCC
CGTAACGGGAGATCAATTGAAAGCCGTGATTCAACAAGTTCTCCCAGGTAGTATTTCGTGA
ATGTCTAAAAGCATTCTGATTGTTGATGACTCTAGTACTGTTCTTATGAGTGTCGATGCCATGCTCTCTAAACTGGGTTT
CCAAGTCGAGAAAGCAAAAGATGGCGTTGAAGCAGAAACTCGACTCAAAGGTGGTCTAAAAGTCAACCTCATCATTACCG
ACATCAATATGCCTCGTATGGATGGTATTGAGTTGATTAGCAAAATTCGTGCGATTGCTTCATATCGCTTTACCCCAATT
TTAGTGCTCACTACAGAACAAGAACAAGCCAAACGCAATGAGGCTCGCGCCAAAGGTGCAACAGGTTATTTAGTTAAGCC
CGTAACGGGAGATCAATTGAAAGCCGTGATTCAACAAGTTCTCCCAGGTAGTATTTCGTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilL-C | Synechocystis sp. PCC 6803 |
39.2 |
99.206 |
0.389 |