Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   HPYLPMSS1_RS00100 Genome accession   NZ_CP018823
Coordinates   13791..14054 (+) Length   87 a.a.
NCBI ID   WP_000584956.1    Uniprot ID   -
Organism   Helicobacter pylori PMSS1     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 8791..19054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPYLPMSS1_RS00070 (HPYLPMSS1_00014) groES 9079..9435 (-) 357 WP_000671925.1 co-chaperone GroES -
  HPYLPMSS1_RS00080 (HPYLPMSS1_00015) dnaG 9722..11401 (+) 1680 WP_077231600.1 DNA primase -
  HPYLPMSS1_RS00085 (HPYLPMSS1_00016) - 11398..12450 (+) 1053 WP_077231601.1 MnmA/TRMU family protein -
  HPYLPMSS1_RS00090 (HPYLPMSS1_00017) - 12538..13365 (+) 828 WP_077231602.1 DUF5718 family protein -
  HPYLPMSS1_RS00095 (HPYLPMSS1_00018) comB2 13510..13791 (+) 282 WP_001272690.1 TrbC/VirB2 family protein Machinery gene
  HPYLPMSS1_RS00100 (HPYLPMSS1_00019) comB3 13791..14054 (+) 264 WP_000584956.1 hypothetical protein Machinery gene
  HPYLPMSS1_RS00105 (HPYLPMSS1_00020) comB4 14056..16419 (+) 2364 WP_077231603.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HPYLPMSS1_RS00115 (HPYLPMSS1_00021) - 16722..18062 (+) 1341 WP_162272563.1 COG3014 family protein -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10006.08 Da        Isoelectric Point: 9.5290

>NTDB_id=210668 HPYLPMSS1_RS00100 WP_000584956.1 13791..14054(+) (comB3) [Helicobacter pylori PMSS1]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIVAKSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=210668 HPYLPMSS1_RS00100 WP_000584956.1 13791..14054(+) (comB3) [Helicobacter pylori PMSS1]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATCTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTGTGGCTAAAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

100

100

1

Multiple sequence alignment