Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | CNX73_RS02340 | Genome accession | NZ_CP024023 |
| Coordinates | 455232..455498 (+) | Length | 88 a.a. |
| NCBI ID | WP_001173705.1 | Uniprot ID | A0A8J3FT93 |
| Organism | Helicobacter pylori isolate 7.13_D3c | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 450232..460498
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CNX73_RS02320 (CNX73_02310) | - | 452307..453087 (+) | 781 | Protein_431 | hypothetical protein | - |
| CNX73_RS02325 (CNX73_02315) | - | 453106..453399 (+) | 294 | WP_001160321.1 | hypothetical protein | - |
| CNX73_RS02330 (CNX73_02320) | - | 453406..454932 (+) | 1527 | WP_000323325.1 | hypothetical protein | - |
| CNX73_RS02335 (CNX73_02325) | - | 454929..455231 (+) | 303 | WP_000850076.1 | hypothetical protein | - |
| CNX73_RS02340 (CNX73_02330) | comB3 | 455232..455498 (+) | 267 | WP_001173705.1 | hypothetical protein | Machinery gene |
| CNX73_RS02345 (CNX73_02335) | - | 455545..457913 (+) | 2369 | Protein_436 | VirB4 family type IV secretion/conjugal transfer ATPase | - |
| CNX73_RS02350 (CNX73_02340) | - | 457916..459949 (+) | 2034 | WP_000655395.1 | type IA DNA topoisomerase | - |
| CNX73_RS08655 (CNX73_02345) | - | 460141..460440 (+) | 300 | WP_000366737.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 88 a.a. Molecular weight: 10162.98 Da Isoelectric Point: 4.8782
>NTDB_id=209643 CNX73_RS02340 WP_001173705.1 455232..455498(+) (comB3) [Helicobacter pylori isolate 7.13_D3c]
MALHIVCVESINIREISKRETFLGLNLDSWIVSFLMSAWLLSFQPLYAMGLMASCVFVFYILEFFDEDITAILHALFTLR
TGARNYYA
MALHIVCVESINIREISKRETFLGLNLDSWIVSFLMSAWLLSFQPLYAMGLMASCVFVFYILEFFDEDITAILHALFTLR
TGARNYYA
Nucleotide
Download Length: 267 bp
>NTDB_id=209643 CNX73_RS02340 WP_001173705.1 455232..455498(+) (comB3) [Helicobacter pylori isolate 7.13_D3c]
ATGGCATTGCATATTGTTTGTGTTGAAAGTATCAACATTAGAGAAATCAGCAAAAGAGAAACTTTTTTGGGATTAAACTT
GGATAGCTGGATTGTTAGCTTCTTAATGTCGGCATGGTTGCTTTCATTCCAACCACTTTATGCTATGGGTTTAATGGCTA
GTTGTGTGTTTGTATTTTACATTTTAGAATTTTTTGATGAAGATATAACAGCCATTTTGCATGCACTTTTCACATTAAGA
ACAGGAGCTAGAAATTATTATGCTTGA
ATGGCATTGCATATTGTTTGTGTTGAAAGTATCAACATTAGAGAAATCAGCAAAAGAGAAACTTTTTTGGGATTAAACTT
GGATAGCTGGATTGTTAGCTTCTTAATGTCGGCATGGTTGCTTTCATTCCAACCACTTTATGCTATGGGTTTAATGGCTA
GTTGTGTGTTTGTATTTTACATTTTAGAATTTTTTGATGAAGATATAACAGCCATTTTGCATGCACTTTTCACATTAAGA
ACAGGAGCTAGAAATTATTATGCTTGA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
42.169 |
94.318 |
0.398 |