Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   BSR55_RS19945 Genome accession   NZ_CP018259
Coordinates   4216121..4216447 (-) Length   108 a.a.
NCBI ID   WP_004826222.1    Uniprot ID   A0A0A8TPZ3
Organism   Acinetobacter bereziniae strain XH901     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4211121..4221447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR55_RS19925 (BSR55_19925) - 4211140..4211898 (-) 759 WP_167387373.1 FHA domain-containing protein -
  BSR55_RS19930 (BSR55_19930) gspD 4212072..4214321 (-) 2250 WP_100886120.1 type II secretion system secretin GspD -
  BSR55_RS19935 (BSR55_19935) - 4214363..4215214 (-) 852 WP_004826224.1 type II secretion system protein N -
  BSR55_RS19940 (BSR55_19940) gspN 4215214..4215957 (-) 744 WP_046760611.1 type II secretion system protein N -
  BSR55_RS19945 (BSR55_19945) hns 4216121..4216447 (-) 327 WP_004826222.1 H-NS family nucleoid-associated regulatory protein Regulator
  BSR55_RS19950 (BSR55_19950) - 4216674..4217111 (-) 438 WP_004826221.1 acyl-CoA thioesterase -
  BSR55_RS19955 (BSR55_19955) - 4217121..4218314 (-) 1194 WP_100886121.1 hypothetical protein -
  BSR55_RS19960 (BSR55_19960) - 4218319..4219149 (-) 831 WP_100886122.1 hypothetical protein -
  BSR55_RS19965 (BSR55_19965) - 4219146..4219928 (-) 783 WP_100886123.1 uroporphyrinogen-III synthase -
  BSR55_RS19970 (BSR55_19970) hemC 4219939..4220865 (-) 927 WP_026040287.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12354.13 Da        Isoelectric Point: 8.4039

>NTDB_id=207807 BSR55_RS19945 WP_004826222.1 4216121..4216447(-) (hns) [Acinetobacter bereziniae strain XH901]
MMPDISNLSVEELRKLTAEAEALIESKKDQAIEDAYNKIVEIAESAGLSLEQFIEYGAQKRKKTTRKAVEPRYRNKKNTA
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=207807 BSR55_RS19945 WP_004826222.1 4216121..4216447(-) (hns) [Acinetobacter bereziniae strain XH901]
ATGATGCCTGATATTAGTAATTTATCTGTTGAAGAGTTAAGAAAGTTAACAGCTGAAGCTGAAGCTTTAATTGAAAGTAA
AAAAGATCAAGCGATCGAAGATGCTTATAATAAGATTGTTGAAATTGCAGAATCTGCGGGTTTAAGCCTAGAGCAGTTTA
TTGAGTATGGTGCTCAAAAACGTAAAAAGACAACACGTAAAGCTGTTGAGCCACGCTACCGCAATAAGAAAAATACGGCT
GAAACTTGGACGGGTCGTGGTAAGCAACCTCGCTGGTTGGTTGCTGAAATTGAAAAAGGCGCTAAATTAGAAGATTTCTT
GATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A8TPZ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

81.481

100

0.815

Multiple sequence alignment