Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BSR30_RS11500 Genome accession   NZ_CP018205
Coordinates   2162514..2162909 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain HG001 isolate RN1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2157514..2167909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR30_RS11475 thiE 2158114..2158755 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  BSR30_RS11480 thiM 2158757..2159548 (-) 792 WP_001108479.1 hydroxyethylthiazole kinase -
  BSR30_RS11485 thiD 2159532..2160362 (-) 831 WP_000594959.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  BSR30_RS11490 tenA 2160355..2161044 (-) 690 WP_000396076.1 thiaminase II -
  BSR30_RS11495 sceD 2161430..2162125 (-) 696 WP_000752008.1 lytic transglycosylase SceD -
  BSR30_RS11500 ssb 2162514..2162909 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  BSR30_RS11505 - 2163103..2163543 (+) 441 WP_000846746.1 YwpF-like family protein -
  BSR30_RS11510 fabZ 2163602..2164042 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  BSR30_RS11515 murA 2164076..2165341 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  BSR30_RS11520 - 2165452..2165685 (-) 234 WP_000384523.1 DUF1146 family protein -
  BSR30_RS11525 - 2165817..2165909 (-) 93 WP_001790611.1 hypothetical protein -
  BSR30_RS11530 - 2166247..2166651 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=207259 BSR30_RS11500 WP_000932694.1 2162514..2162909(-) (ssb) [Staphylococcus aureus strain HG001 isolate RN1]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=207259 BSR30_RS11500 WP_000932694.1 2162514..2162909(-) (ssb) [Staphylococcus aureus strain HG001 isolate RN1]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment