Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   Bateq7PJ16_RS12940 Genome accession   NZ_CP023409
Coordinates   2401237..2402727 (-) Length   496 a.a.
NCBI ID   WP_015251799.1    Uniprot ID   -
Organism   Bacillus subtilis strain 7PJ-16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2396237..2407727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Bateq7PJ16_RS12910 (Bateq7PJ16_2553) gudB 2396381..2397655 (-) 1275 WP_003230536.1 NAD-specific glutamate dehydrogenase -
  Bateq7PJ16_RS12915 (Bateq7PJ16_2555) mecB 2397811..2398395 (-) 585 WP_003230533.1 genetic competence negative regulator -
  Bateq7PJ16_RS12920 (Bateq7PJ16_2556) ypbG 2398554..2399333 (-) 780 WP_003230532.1 metallophosphoesterase -
  Bateq7PJ16_RS12925 (Bateq7PJ16_2557) ypbF 2399420..2399863 (-) 444 WP_003230531.1 YpbF family protein -
  Bateq7PJ16_RS12930 (Bateq7PJ16_2558) claE 2399926..2400657 (-) 732 WP_072173297.1 LysM peptidoglycan-binding domain-containing protein -
  Bateq7PJ16_RS12935 (Bateq7PJ16_2559) ypbD 2400608..2401210 (-) 603 WP_014477208.1 CPBP family intramembrane glutamic endopeptidase -
  Bateq7PJ16_RS12940 (Bateq7PJ16_2560) recS 2401237..2402727 (-) 1491 WP_015251799.1 ATP-dependent DNA helicase RecQ Machinery gene
  Bateq7PJ16_RS12945 (Bateq7PJ16_2561) gmmB 2402720..2403778 (-) 1059 WP_014477210.1 helix-turn-helix domain-containing protein -
  Bateq7PJ16_RS12950 (Bateq7PJ16_2562) fdxA 2404044..2404292 (+) 249 WP_003225461.1 ferredoxin -
  Bateq7PJ16_RS12955 (Bateq7PJ16_2563) fmnP 2404332..2404904 (-) 573 WP_004399159.1 riboflavin transporter FmnP -
  Bateq7PJ16_RS12960 (Bateq7PJ16_2565) serA 2405401..2406978 (+) 1578 WP_004398713.1 phosphoglycerate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 56509.05 Da        Isoelectric Point: 6.4518

>NTDB_id=207186 Bateq7PJ16_RS12940 WP_015251799.1 2401237..2402727(-) (recS) [Bacillus subtilis strain 7PJ-16]
MTKLQQTLYQFFGFTSFKKGQQDIIESILSGKDTIAMLPTGGGKSLCYQLPGYMLDGMVLIVSPLLSLMEDQVQQLKARG
EKRAAALNSMLNRQERQFVLEHIHRYKFLYLSPEALQSPYVLEKLKSVPISLFVIDEAHCISEWGHDFRPDYSKLGQLRK
KLGHPPVLALTATATKETLQDVMNLLELQHAVRHLNSVNRPNIALRVENAADTAEKIDRVIQLVENLQGPGIVYCPTRKW
AEELAGEIKSKTSSRADFYHGGLESGDRILIQQQFIHNQLDVICCTNAFGMGVDKPDIRYVIHFHLPQTAEAFMQEIGRA
GRDGKPSVSILLRAPGDFELQEQIIQMESVTAEEIADVIRVLEKTEERDERRLRDVLLQYGVGETQARMMIHLFMQGKTS
VELMKKEISYRMELKLEKMHRVSFLLQRDGCLRQALLTYFDESYEPDDGNLPCCSHCGFDLSLYEQKGERSKMAPLDSWS
SELHRIFSLQTVGELN

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=207186 Bateq7PJ16_RS12940 WP_015251799.1 2401237..2402727(-) (recS) [Bacillus subtilis strain 7PJ-16]
ATGACTAAATTACAGCAAACGTTATATCAGTTTTTTGGTTTTACTTCCTTTAAAAAAGGGCAGCAGGACATTATTGAAAG
CATACTCAGCGGGAAGGATACCATTGCAATGCTCCCGACTGGGGGAGGGAAATCGCTTTGCTACCAGCTGCCTGGTTATA
TGCTTGACGGCATGGTATTAATCGTTTCTCCACTGCTTTCTTTAATGGAGGATCAGGTGCAGCAGCTGAAAGCCCGGGGG
GAAAAGCGTGCTGCAGCTTTGAACAGCATGCTTAACAGGCAGGAAAGACAATTTGTTTTAGAACATATTCATCGATATAA
ATTTTTGTACTTGTCTCCTGAAGCTTTACAGTCTCCATATGTATTGGAAAAATTGAAAAGCGTCCCGATCAGCCTATTTG
TTATTGACGAAGCGCATTGTATTTCTGAATGGGGACACGACTTCAGGCCTGATTATTCAAAGCTCGGACAGCTGAGAAAA
AAACTTGGTCACCCGCCCGTTCTGGCATTGACCGCCACGGCTACAAAGGAAACGCTGCAAGATGTCATGAACCTGCTGGA
GCTGCAGCATGCTGTACGCCATCTCAACTCAGTCAACCGCCCAAACATCGCACTGAGGGTTGAAAATGCGGCGGATACTG
CCGAAAAAATAGATAGGGTCATTCAGCTGGTTGAAAACCTGCAAGGCCCGGGAATTGTTTATTGTCCGACACGGAAATGG
GCTGAGGAATTAGCGGGTGAGATTAAAAGCAAAACGAGCAGCAGAGCCGACTTTTACCATGGCGGTTTGGAGTCAGGGGA
CAGGATTTTAATTCAGCAGCAGTTTATTCATAACCAGCTTGATGTGATATGTTGTACGAATGCGTTTGGAATGGGTGTCG
ATAAACCTGATATCAGATATGTGATTCATTTTCACCTCCCGCAGACGGCAGAAGCTTTTATGCAGGAAATCGGCAGAGCG
GGACGCGACGGAAAGCCGAGTGTCAGCATTTTGCTGCGGGCGCCAGGGGATTTTGAATTGCAGGAACAAATTATCCAGAT
GGAGAGTGTCACAGCTGAAGAAATCGCCGACGTAATCCGTGTGCTAGAGAAGACGGAGGAGCGGGATGAGAGAAGGCTGC
GTGACGTATTACTTCAGTATGGGGTCGGAGAGACACAGGCCCGTATGATGATTCATCTCTTTATGCAGGGAAAAACATCA
GTTGAACTGATGAAGAAAGAAATTTCATATCGCATGGAGCTGAAGCTGGAAAAAATGCACCGTGTATCATTTTTGCTTCA
GCGTGACGGCTGTTTAAGGCAGGCACTGTTAACCTACTTTGATGAATCATACGAGCCCGATGACGGAAACCTTCCGTGCT
GTTCACATTGCGGTTTTGATTTATCCTTGTATGAACAAAAAGGGGAACGGAGTAAAATGGCGCCATTAGACAGCTGGAGT
TCGGAATTGCACCGGATATTCAGCTTGCAGACTGTAGGTGAGCTGAACTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-323)

DEAD/DEAH box helicase (DEAD)

(20-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

99.798

100

0.998

Multiple sequence alignment