Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   BK815_RS05600 Genome accession   NZ_CP018199
Coordinates   1123699..1124262 (-) Length   187 a.a.
NCBI ID   WP_046838110.1    Uniprot ID   -
Organism   Staphylococcus succinus strain 14BME20     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1118699..1129262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BK815_RS05565 - 1118991..1120343 (-) 1353 WP_073504731.1 isochorismate synthase -
  BK815_RS05570 - 1120525..1121463 (+) 939 WP_046838113.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  BK815_RS05575 - 1121556..1122122 (-) 567 WP_073504732.1 GNAT family N-acetyltransferase -
  BK815_RS05580 - 1122289..1122501 (+) 213 WP_046838117.1 TM2 domain-containing protein -
  BK815_RS05585 - 1122930..1123121 (-) 192 WP_046838111.1 hypothetical protein -
  BK815_RS05600 comK/comK1 1123699..1124262 (-) 564 WP_046838110.1 competence protein ComK Regulator
  BK815_RS05605 - 1124516..1124734 (+) 219 WP_046838109.1 IDEAL domain-containing protein -
  BK815_RS05610 - 1124834..1125823 (-) 990 WP_073504733.1 lipoate--protein ligase -
  BK815_RS05615 - 1126025..1126210 (+) 186 WP_046838107.1 YkvS family protein -
  BK815_RS05620 - 1126216..1126818 (+) 603 WP_046838106.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  BK815_RS05625 - 1126990..1128498 (-) 1509 WP_073504734.1 bifunctional metallophosphatase/5'-nucleotidase -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 22072.35 Da        Isoelectric Point: 9.2547

>NTDB_id=207080 BK815_RS05600 WP_046838110.1 1123699..1124262(-) (comK/comK1) [Staphylococcus succinus strain 14BME20]
MIQQYIIKKGDMALQPCNLSIGQYEGTSIYKYKEESNVIKDRIHKIIDRSCRFYGSSYVFKKEDTMRITGICSKPPILFT
PLFPTYFFPTHSDRKEENTWINIHYVQSIRTLKDKKSKVTFVDNQSMIVNISAHSMQHQYLNGIYYYYMMDRAARVATFD
PESPIDYTKSQLNIYEALAKYSLFENK

Nucleotide


Download         Length: 564 bp        

>NTDB_id=207080 BK815_RS05600 WP_046838110.1 1123699..1124262(-) (comK/comK1) [Staphylococcus succinus strain 14BME20]
ATGATTCAACAATACATTATTAAAAAAGGTGATATGGCGCTTCAACCATGTAACTTGTCAATTGGACAGTATGAAGGCAC
ATCTATCTACAAGTACAAAGAAGAAAGTAATGTCATAAAAGATCGAATACATAAAATTATCGACCGTTCATGCAGGTTCT
ATGGTAGTAGTTATGTATTTAAAAAAGAAGATACCATGAGAATCACTGGTATTTGTAGTAAACCACCCATTTTATTCACC
CCGTTATTTCCTACTTATTTCTTTCCAACCCATTCAGACCGTAAAGAAGAAAACACTTGGATTAACATTCATTATGTTCA
GAGTATTAGAACGCTAAAAGATAAGAAATCTAAAGTGACTTTCGTAGATAATCAATCTATGATTGTTAATATTTCAGCAC
ATAGTATGCAACATCAATACTTAAATGGTATATACTACTATTATATGATGGATAGAGCAGCTAGAGTTGCTACATTTGAT
CCTGAATCTCCTATTGATTATACGAAATCACAATTAAATATTTACGAAGCCTTGGCTAAATACTCTTTATTTGAAAATAA
GTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(3-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

53.552

97.861

0.524
  comK/comK1 Staphylococcus aureus N315

53.552

97.861

0.524

Multiple sequence alignment