Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   CLD04_RS08740 Genome accession   NZ_CP023257
Coordinates   1632299..1632748 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain TLO3     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1627299..1637748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLD04_RS08700 (CLD04_08700) ctaE 1627315..1627938 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  CLD04_RS08705 (CLD04_08705) ctaF 1627941..1628273 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  CLD04_RS08710 (CLD04_08710) ctaG 1628301..1629194 (+) 894 WP_014479711.1 cytochrome c oxidase assembly factor CtaG -
  CLD04_RS08715 (CLD04_08715) ylbA 1629226..1629588 (-) 363 WP_014479712.1 YugN family protein -
  CLD04_RS08720 (CLD04_08720) ylbB 1629728..1630174 (+) 447 WP_003221362.1 CBS domain-containing protein -
  CLD04_RS08725 (CLD04_08725) ylbC 1630258..1631298 (+) 1041 WP_014479713.1 CAP domain-containing protein -
  CLD04_RS08730 (CLD04_08730) ylbD 1631530..1631928 (+) 399 WP_003232233.1 YlbD family protein -
  CLD04_RS08735 (CLD04_08735) ylbE 1631944..1632183 (+) 240 WP_003232231.1 YlbE-like family protein -
  CLD04_RS08740 (CLD04_08740) ylbF 1632299..1632748 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  CLD04_RS08745 (CLD04_08745) ylbG 1632803..1633075 (+) 273 WP_009967171.1 YlbG family protein -
  CLD04_RS08750 (CLD04_08750) rsmD 1633398..1633952 (+) 555 WP_017694816.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  CLD04_RS08755 (CLD04_08755) coaD 1633957..1634442 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  CLD04_RS08760 (CLD04_08760) spoVV 1634453..1635679 (-) 1227 WP_017694817.1 dipicolinic acid transporter SpoVV -
  CLD04_RS08765 (CLD04_08765) ylbK 1635860..1636642 (+) 783 WP_017694818.1 patatin family protein -
  CLD04_RS08770 (CLD04_08770) sepM 1636644..1637669 (+) 1026 WP_014476730.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=205758 CLD04_RS08740 WP_003221370.1 1632299..1632748(+) (ylbF) [Bacillus subtilis strain TLO3]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=205758 CLD04_RS08740 WP_003221370.1 1632299..1632748(+) (ylbF) [Bacillus subtilis strain TLO3]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAATTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTCGAGATTGGGACAGCTGTCTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment