Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   Aba9102_RS09320 Genome accession   NZ_CP023029
Coordinates   1890401..1890727 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   A0A151YUA4
Organism   Acinetobacter baumannii strain 9102     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1885401..1895727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Aba9102_RS09300 (Aba9102_09295) - 1885501..1886130 (-) 630 WP_000219967.1 FHA domain-containing protein -
  Aba9102_RS09305 (Aba9102_09300) gspD 1886171..1888447 (-) 2277 WP_001196426.1 type II secretion system secretin GspD -
  Aba9102_RS09310 (Aba9102_09305) - 1888489..1889325 (-) 837 WP_000870031.1 type II secretion system protein N -
  Aba9102_RS09315 (Aba9102_09310) gspN 1889325..1890068 (-) 744 WP_000730342.1 type II secretion system protein N -
  Aba9102_RS09320 (Aba9102_09315) hns 1890401..1890727 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  Aba9102_RS09325 (Aba9102_09320) - 1890944..1891912 (-) 969 WP_014538385.1 IS30 family transposase -
  Aba9102_RS09330 (Aba9102_09325) - 1892359..1893138 (-) 780 WP_000422634.1 APH(3')-VI family aminoglycoside O-phosphotransferase -
  Aba9102_RS09335 (Aba9102_09335) - 1893239..1894207 (-) 969 WP_014538385.1 IS30 family transposase -
  Aba9102_RS09340 (Aba9102_09340) - 1894277..1894747 (-) 471 WP_205731119.1 acyl-CoA thioesterase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=204976 Aba9102_RS09320 WP_000801427.1 1890401..1890727(-) (hns) [Acinetobacter baumannii strain 9102]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=204976 Aba9102_RS09320 WP_000801427.1 1890401..1890727(-) (hns) [Acinetobacter baumannii strain 9102]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAAATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterProScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A151YUA4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1