Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   Aba10324_RS07875 Genome accession   NZ_CP023022
Coordinates   1635417..1635779 (-) Length   120 a.a.
NCBI ID   WP_000101096.1    Uniprot ID   A0ABN3ANQ3
Organism   Acinetobacter baumannii strain 10324     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1630417..1640779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Aba10324_RS07850 (Aba10324_07855) - 1630621..1631529 (+) 909 WP_001017534.1 DUF1853 family protein -
  Aba10324_RS07855 (Aba10324_07860) - 1631628..1631771 (+) 144 WP_001984826.1 entericidin A/B family lipoprotein -
  Aba10324_RS07860 (Aba10324_07865) dapE 1631897..1633033 (+) 1137 WP_001016573.1 succinyl-diaminopimelate desuccinylase -
  Aba10324_RS19420 - 1633069..1633266 (-) 198 Protein_1537 hypothetical protein -
  Aba10324_RS07865 (Aba10324_07870) - 1633262..1634773 (-) 1512 Protein_1538 methyl-accepting chemotaxis protein -
  Aba10324_RS07870 (Aba10324_07875) - 1634820..1635356 (-) 537 WP_000729762.1 chemotaxis protein CheW -
  Aba10324_RS07875 (Aba10324_07880) pilH 1635417..1635779 (-) 363 WP_000101096.1 PleD family two-component system response regulator Machinery gene
  Aba10324_RS07880 (Aba10324_07885) pilG 1635803..1636186 (-) 384 WP_000389061.1 twitching motility response regulator PilG Regulator
  Aba10324_RS07885 (Aba10324_07890) - 1636469..1637107 (+) 639 WP_002027721.1 hypothetical protein -
  Aba10324_RS07890 (Aba10324_07895) - 1637167..1638285 (+) 1119 WP_118878135.1 efflux RND transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13479.47 Da        Isoelectric Point: 4.9102

>NTDB_id=204822 Aba10324_RS07875 WP_000101096.1 1635417..1635779(-) (pilH) [Acinetobacter baumannii strain 10324]
MARILIVDDSPTETFRFKEILTKHGYDVLEASNGADGVTLAKAEQPDLVLMDVVMPGVNGFQATRQITRDEDTKHIPVVI
VSTKDQATDRVWGKRQGAIDYLIKPIEEKQLIDVIKQFLN

Nucleotide


Download         Length: 363 bp        

>NTDB_id=204822 Aba10324_RS07875 WP_000101096.1 1635417..1635779(-) (pilH) [Acinetobacter baumannii strain 10324]
ATGGCACGTATTCTCATTGTTGATGACTCACCAACAGAAACTTTTCGTTTTAAAGAAATCCTAACTAAGCATGGCTATGA
CGTACTTGAAGCATCTAACGGTGCAGATGGTGTGACTTTGGCAAAAGCTGAGCAGCCTGACTTGGTATTAATGGATGTGG
TCATGCCAGGTGTAAATGGTTTTCAGGCAACGCGCCAGATTACCCGTGATGAAGACACGAAGCATATTCCAGTGGTGATT
GTGAGTACTAAAGATCAGGCAACTGACCGAGTATGGGGTAAACGTCAAGGCGCAATCGATTACTTAATCAAGCCAATCGA
AGAAAAGCAATTAATTGATGTAATTAAACAATTTCTAAATTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

39.496

99.167

0.392

Multiple sequence alignment