Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   CJZ79_RS02625 Genome accession   NZ_CP022912
Coordinates   519662..520294 (-) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli O6:H16 strain 2011EL-1370-2     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 514662..525294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJZ79_RS02600 yhfG 514794..514961 (+) 168 WP_000736860.1 YhfG family protein -
  CJZ79_RS02605 fic 514951..515553 (+) 603 WP_001280624.1 putative adenosine monophosphate-protein transferase Fic -
  CJZ79_RS02610 pabA 515585..516148 (+) 564 WP_000601847.1 aminodeoxychorismate synthase component 2 -
  CJZ79_RS02615 argD 516234..517454 (+) 1221 WP_000963792.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  CJZ79_RS02620 yhfK 517521..519611 (-) 2091 WP_001295162.1 YccS/YhfK family putative transporter -
  CJZ79_RS02625 crp 519662..520294 (-) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  CJZ79_RS02635 yhfA 520596..521000 (+) 405 WP_001148908.1 OsmC family protein -
  CJZ79_RS02640 prkB 521055..521924 (-) 870 WP_001274680.1 phosphoribulokinase -
  CJZ79_RS02645 yheU 521978..522196 (-) 219 WP_000907085.1 YheU family protein -
  CJZ79_RS02650 yheT 522190..523212 (-) 1023 WP_000057356.1 hydrolase -
  CJZ79_RS02655 yheS 523212..525125 (-) 1914 WP_000634798.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=204575 CJZ79_RS02625 WP_000242755.1 519662..520294(-) (crp) [Escherichia coli O6:H16 strain 2011EL-1370-2]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=204575 CJZ79_RS02625 WP_000242755.1 519662..520294(-) (crp) [Escherichia coli O6:H16 strain 2011EL-1370-2]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAATCTGGCAAAACAACCAGACGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATCGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTTGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment