NTDB

Overview

Name	ysxA/radC	Type	Machinery gene
Locus tag	CGP88_RS08640	Genome accession	NZ_CP022910
Coordinates	1694190..1694876 (-)	Length	228 a.a.
NCBI ID	WP_000692870.1	Uniprot ID	Q8NW77
Organism	Staphylococcus aureus strain 164
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1689190..1699876

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CGP88_RS08595 (CGP88_01572)	rpmA	1690029..1690313 (-)	285	WP_000916187.1	50S ribosomal protein L27	-
CGP88_RS08600 (CGP88_01573)	-	1690325..1690645 (-)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
CGP88_RS08605 (CGP88_01574)	rplU	1690651..1690959 (-)	309	WP_000457386.1	50S ribosomal protein L21	-
CGP88_RS08610 (CGP88_01575)	mreD	1691126..1691656 (-)	531	WP_001259925.1	rod shape-determining protein MreD	-
CGP88_RS08615 (CGP88_01576)	mreC	1691656..1692498 (-)	843	WP_000911041.1	rod shape-determining protein MreC	-
CGP88_RS08620	-	1692698..1692817 (-)	120	WP_000840602.1	hypothetical protein	-
CGP88_RS08625 (CGP88_01577)	-	1692891..1693364 (-)	474	WP_001236735.1	DUF4930 family protein	-
CGP88_RS08630	-	1693524..1693721 (+)	198	WP_000025835.1	hypothetical protein	-
CGP88_RS08635 (CGP88_01578)	-	1693838..1694122 (-)	285	WP_000171859.1	hypothetical protein	-
CGP88_RS08640 (CGP88_01579)	ysxA/radC	1694190..1694876 (-)	687	WP_000692870.1	DNA repair protein RadC	Machinery gene
CGP88_RS08645 (CGP88_01580)	-	1694873..1695580 (-)	708	WP_000261115.1	A24 family peptidase	-
CGP88_RS08655 (CGP88_01581)	-	1695850..1697121 (-)	1272	WP_001108346.1	folylpolyglutamate synthase/dihydrofolate synthase family protein	-
CGP88_RS08660 (CGP88_01582)	-	1697134..1699764 (-)	2631	WP_000425353.1	valine--tRNA ligase	-

Sequence

Protein

Download Length: 228 a.a. Molecular weight: 25311.28 Da Isoelectric Point: 7.0539

                                >NTDB_id=204537 CGP88_RS08640 WP_000692870.1 1694190..1694876(-) (ysxA/radC) [Staphylococcus aureus strain 164]

MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIKVKGIGLQKAI

TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREIFSI

AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide

Download Length: 687 bp

                                >NTDB_id=204537 CGP88_RS08640 WP_000692870.1 1694190..1694876(-) (ysxA/radC) [Staphylococcus aureus strain 164]

TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC

AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGCATAGACATTAGTAATGAACTGCTTAAATCTG

CTTCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATAAAAGTTAAAGGGATTGGATTACAAAAAGCAATT

ACTTTAAAAGCAGCATTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG

TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA

ATGTAGTGATTAAAGAAACCTGTGTTTTTAAAGGTACATTAAATAGTTCGATTGTACATCCACGTGAAATTTTTAGTATT

GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT

CATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGGATAGATTTATTGGATCATATTATAATCGGTGATAATA

GATTTACCAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-80)

RadC-like JAB domain (RadC)

(103-222)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	Q8NW77

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	52.679	98.246	0.518
radC	Streptococcus pneumoniae TIGR4	41.038	92.982	0.382
radC	Streptococcus gordonii str. Challis substr. CH1	39.908	95.614	0.382
radC	Streptococcus pneumoniae R6	40.566	92.982	0.377
radC	Streptococcus pneumoniae D39	40.566	92.982	0.377

Detailed information NTG0204537