Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   PSJM300_02720 Genome accession   CP003725
Coordinates   603099..603626 (+) Length   175 a.a.
NCBI ID   AFN76622.1    Uniprot ID   -
Organism   Pseudomonas stutzeri DSM 10701     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 598099..608626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSJM300_02700 - 598234..600666 (-) 2433 AFN76618.1 penicillin-binding protein 1A -
  PSJM300_02705 comM 600846..601910 (+) 1065 AFN76619.1 type IV pilus assembly protein PilM Machinery gene
  PSJM300_02710 - 601910..602482 (+) 573 AFN76620.1 type 4 fimbrial biogenesis protein PilN -
  PSJM300_02715 pilO 602479..603102 (+) 624 AFN76621.1 type 4 fimbrial biogenesis protein PilO Machinery gene
  PSJM300_02720 comL/pilP 603099..603626 (+) 528 AFN76622.1 type 4 fimbrial biogenesis protein PilP Machinery gene
  PSJM300_02725 pilQ 603680..605785 (+) 2106 AFN76623.1 type 4 fimbrial biogenesis protein PilQ Machinery gene
  PSJM300_02730 - 605846..606334 (+) 489 AFN76624.1 shikimate kinase -
  PSJM300_02735 aroB 606358..607458 (+) 1101 AFN76625.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19514.36 Da        Isoelectric Point: 5.3265

>NTDB_id=20450 PSJM300_02720 AFN76622.1 603099..603626(+) (comL/pilP) [Pseudomonas stutzeri DSM 10701]
MIRAQVIAVGLGVLLLSGCGADRDFADLQIYMDEVRAKPKGSIEPLPTFLPYEAFTYSAASLRHPFQPPMKLDLAQRQKG
SKDIRPDETRIKQFLEEFNIENFVMVGTLTNDAGMYALIRGGDGVHRVKIGDYLGRNHGRIVDISEAEVDVLEIVPDGDG
GWLERPRSLTLKERT

Nucleotide


Download         Length: 528 bp        

>NTDB_id=20450 PSJM300_02720 AFN76622.1 603099..603626(+) (comL/pilP) [Pseudomonas stutzeri DSM 10701]
ATGATCAGAGCCCAAGTTATTGCCGTGGGGTTGGGAGTTCTGCTTCTTTCGGGTTGCGGTGCCGATCGCGACTTTGCCGA
CCTGCAAATCTATATGGATGAGGTGCGGGCGAAGCCGAAAGGCTCGATCGAACCTCTGCCTACGTTTCTGCCCTACGAAG
CCTTCACCTATAGCGCGGCCTCCCTGCGTCACCCGTTCCAGCCGCCGATGAAGCTCGATCTGGCACAGCGGCAGAAGGGT
TCGAAGGACATTCGCCCCGACGAGACACGCATCAAGCAGTTCCTCGAAGAGTTCAATATCGAAAACTTCGTCATGGTCGG
AACCTTGACCAATGACGCAGGCATGTATGCCCTGATTCGGGGTGGTGATGGGGTTCACCGTGTGAAGATCGGTGACTATC
TGGGGCGCAACCATGGCCGCATCGTTGACATCAGCGAGGCGGAGGTCGATGTGCTTGAAATCGTGCCTGATGGCGATGGT
GGCTGGCTGGAGCGCCCGCGTAGCCTGACCTTGAAAGAGCGCACCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(27-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

39.645

96.571

0.383

Multiple sequence alignment