Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   K08M3_RS13455 Genome accession   NZ_CP017913
Coordinates   2861723..2862241 (-) Length   172 a.a.
NCBI ID   WP_047102662.1    Uniprot ID   A0A0H0YB43
Organism   Vibrio alginolyticus strain K08M3     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2856723..2867241
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K08M3_RS13430 (K08M3_26260) rimM 2856813..2857361 (-) 549 WP_005379964.1 ribosome maturation factor RimM -
  K08M3_RS13435 (K08M3_26270) rpsP 2857391..2857639 (-) 249 WP_005379962.1 30S ribosomal protein S16 -
  K08M3_RS13440 (K08M3_26280) ffh 2857849..2859231 (-) 1383 WP_086047032.1 signal recognition particle protein -
  K08M3_RS13445 (K08M3_26290) - 2859456..2860250 (+) 795 WP_005379950.1 cytochrome C assembly family protein -
  K08M3_RS13450 (K08M3_26300) - 2860375..2861655 (+) 1281 WP_005379948.1 HlyC/CorC family transporter -
  K08M3_RS13455 (K08M3_26310) luxS 2861723..2862241 (-) 519 WP_047102662.1 S-ribosylhomocysteine lyase Regulator
  K08M3_RS13460 (K08M3_26320) - 2862326..2862931 (-) 606 WP_005379943.1 hypothetical protein -
  K08M3_RS13465 (K08M3_26330) gshA 2862955..2864523 (-) 1569 WP_086047033.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19102.84 Da        Isoelectric Point: 4.8443

>NTDB_id=204010 K08M3_RS13455 WP_047102662.1 2861723..2862241(-) (luxS) [Vibrio alginolyticus strain K08M3]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVESQNRIPELNEYQCGTAAMHSLKEAQQIAKNILDAGVSVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=204010 K08M3_RS13455 WP_047102662.1 2861723..2862241(-) (luxS) [Vibrio alginolyticus strain K08M3]
ATGCCTTTACTCGATAGTTTTACCGTGGACCACACTCGTATGAATGCACCCGCTGTACGAGTGGCGAAAACCATGCAGAC
CCCAAAAGGGGATACGATTACTGTTTTCGACTTACGCTTTACTGCGCCAAACAAAGACATTCTTTCTGAAAAAGGTATTC
ACACCCTAGAGCACCTTTATGCAGGCTTTATGCGTAATCACCTAAACGGTGATTCTGTTGAGATCATCGATATTTCGCCT
ATGGGTTGCCGCACAGGTTTTTACATGAGCCTGATTGGCACACCATCAGAGCAGCAAGTCGCAGATGCTTGGATTGCAGC
AATGGAAGATGTGCTGAAGGTAGAAAGTCAGAATAGGATCCCTGAACTTAACGAATACCAATGCGGCACGGCAGCAATGC
ACTCTTTAAAAGAAGCACAACAGATCGCAAAGAACATTTTGGATGCTGGTGTTTCGGTGAACAAAAATGATGAACTTGCT
TTGCCTGAGTCGATGTTAAAAGAGTTGCGCATCGACTAG

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H0YB43

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.135

99.419

0.866

Multiple sequence alignment