Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   BK049_RS12775 Genome accession   NZ_CP017786
Coordinates   2531240..2531881 (+) Length   213 a.a.
NCBI ID   WP_008357178.1    Uniprot ID   A0AAC9IGZ8
Organism   Bacillus xiamenensis strain VV3     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2526240..2536881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BK049_RS12755 (BK049_12755) - 2526551..2526904 (-) 354 WP_034738645.1 hypothetical protein -
  BK049_RS12760 (BK049_12760) degQ 2527410..2527550 (+) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  BK049_RS12765 (BK049_12765) - 2527703..2528617 (+) 915 WP_008357184.1 polyprenyl synthetase family protein -
  BK049_RS18990 comX 2528614..2528784 (+) 171 WP_008357181.1 competence pheromone ComX -
  BK049_RS12770 (BK049_12770) comP 2528838..2531159 (+) 2322 WP_008357179.1 ATP-binding protein Regulator
  BK049_RS12775 (BK049_12775) comA 2531240..2531881 (+) 642 WP_008357178.1 response regulator transcription factor Regulator
  BK049_RS12780 (BK049_12780) - 2531905..2532294 (+) 390 WP_008357176.1 hotdog fold thioesterase -
  BK049_RS12785 (BK049_12785) mnhG 2532389..2532763 (-) 375 WP_071168673.1 monovalent cation/H(+) antiporter subunit G -
  BK049_RS12790 (BK049_12790) - 2532747..2533028 (-) 282 WP_008357172.1 Na(+)/H(+) antiporter subunit F1 -
  BK049_RS12795 (BK049_12795) - 2533028..2533507 (-) 480 WP_008357170.1 Na+/H+ antiporter subunit E -
  BK049_RS12800 (BK049_12800) - 2533514..2534992 (-) 1479 WP_071168674.1 Na+/H+ antiporter subunit D -
  BK049_RS12805 (BK049_12805) - 2534985..2535326 (-) 342 WP_003213576.1 Na(+)/H(+) antiporter subunit C -
  BK049_RS12810 (BK049_12810) - 2535326..2535757 (-) 432 WP_071168675.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24154.60 Da        Isoelectric Point: 4.6407

>NTDB_id=202929 BK049_RS12775 WP_008357178.1 2531240..2531881(+) (comA) [Bacillus xiamenensis strain VV3]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEAAFLKTHDFSIYDVILMDLNLGDINGMDIAKKILETNQQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHELLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=202929 BK049_RS12775 WP_008357178.1 2531240..2531881(+) (comA) [Bacillus xiamenensis strain VV3]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGATCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGCCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATCTTGA
TGGATTTAAATCTTGGGGATATCAATGGAATGGACATTGCGAAAAAAATTCTAGAAACGAATCAACAAGTGAAAATTATT
ATTTATACAGGATATGAAGTAGATGATTATTTCGAAGAGGCCATTCGAGCTGGATTGCATGGTGCAATAAGTAAAACAGA
GACAAAAGACAAAATTATTGAATACATACACCGCACATTGCAAGGAGAAGTGGTCATTCAGCTATCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAGAAGCCAGAACAGGCGCAGCAGACGGATCATGAGCTGTTAACAGAGCGTGAATGTTTAATT
CTTCGAGAAGTGGAAAAGGGCTACACAAACCAAGAGATCGCCGATGTGCTTCATTTGAGCAAACGCTCGATTGAATACAG
TTTGACATCCATCTTTAATAAGCTGAATGTAGGATCTCGAACAGAAGCGGTGTTAATTGCAAAATCTGAAAGTGTGCTGT
AA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.028

100

0.714

Multiple sequence alignment