Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   BKP58_RS21560 Genome accession   NZ_CP017763
Coordinates   4031192..4031575 (+) Length   127 a.a.
NCBI ID   WP_014480254.1    Uniprot ID   -
Organism   Bacillus subtilis strain 29R7-12     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4026192..4036575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKP58_RS21525 (BKP58_21475) corA 4026646..4027599 (+) 954 WP_014480260.1 magnesium transporter CorA -
  BKP58_RS21530 (BKP58_21480) - 4027601..4027798 (+) 198 WP_014480259.1 CBS domain-containing protein -
  BKP58_RS21535 (BKP58_21490) comGA 4028010..4029080 (+) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  BKP58_RS21540 (BKP58_21495) comGB 4029067..4030104 (+) 1038 WP_031600685.1 comG operon protein ComGB Machinery gene
  BKP58_RS21545 (BKP58_21500) comGC 4030118..4030414 (+) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  BKP58_RS21550 (BKP58_21505) comGD 4030404..4030835 (+) 432 WP_014480256.1 comG operon protein ComGD Machinery gene
  BKP58_RS21555 (BKP58_21510) comGE 4030819..4031166 (+) 348 WP_014480255.1 ComG operon protein 5 Machinery gene
  BKP58_RS21560 (BKP58_21515) comGF 4031192..4031575 (+) 384 WP_014480254.1 ComG operon protein ComGF Machinery gene
  BKP58_RS21565 (BKP58_21520) comGG 4031576..4031950 (+) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  BKP58_RS21570 (BKP58_21525) spoIITA 4032021..4032200 (+) 180 WP_014480252.1 YqzE family protein -
  BKP58_RS21575 (BKP58_21530) yqzG 4032242..4032568 (-) 327 WP_003246051.1 YqzG/YhdC family protein -
  BKP58_RS21580 (BKP58_21535) tapA 4032840..4033601 (+) 762 WP_014480251.1 amyloid fiber anchoring/assembly protein TapA -
  BKP58_RS21585 (BKP58_21540) sipW 4033585..4034157 (+) 573 WP_003230181.1 signal peptidase I SipW -
  BKP58_RS21590 (BKP58_21545) tasA 4034221..4035006 (+) 786 WP_014480250.1 biofilm matrix protein TasA -
  BKP58_RS21595 (BKP58_21550) sinR 4035099..4035434 (-) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  BKP58_RS21600 (BKP58_21555) sinI 4035468..4035641 (-) 174 WP_003230187.1 anti-repressor SinI Regulator

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14329.42 Da        Isoelectric Point: 5.8949

>NTDB_id=202709 BKP58_RS21560 WP_014480254.1 4031192..4031575(+) (comGF) [Bacillus subtilis strain 29R7-12]
MLISGSLAAIFHLFLSRQQEHDGFTQQEWMISIEQMMNECKESQAVKTAEHGSVLICTNLSGQDIRFEIYHSMIRKRVDG
KGHVPILDHITAMKADIENGVVLLKIESEDQKVYQTAFPVYSYLGGG

Nucleotide


Download         Length: 384 bp        

>NTDB_id=202709 BKP58_RS21560 WP_014480254.1 4031192..4031575(+) (comGF) [Bacillus subtilis strain 29R7-12]
TTGCTCATATCAGGATCGTTAGCTGCGATTTTCCATCTGTTTTTGTCTCGACAGCAGGAACATGACGGTTTCACACAGCA
AGAATGGATGATTTCGATAGAACAGATGATGAATGAATGCAAGGAGTCACAGGCAGTTAAGACAGCCGAGCATGGGAGCG
TGTTAATCTGCACCAATCTTTCCGGGCAGGACATCCGTTTCGAAATTTATCATTCAATGATAAGAAAAAGAGTGGATGGC
AAAGGGCATGTTCCGATTTTAGATCATATTACTGCCATGAAAGCTGATATTGAAAATGGTGTTGTTTTGCTGAAAATTGA
GAGTGAGGACCAAAAAGTGTATCAAACTGCTTTTCCAGTCTATTCGTATTTAGGAGGGGGGTGA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(16-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Bacillus subtilis subsp. subtilis str. 168

98.425

100

0.984

Multiple sequence alignment