Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   SPG_1832 Genome accession   CP001015
Coordinates   1747184..1747612 (-) Length   142 a.a.
NCBI ID   ACF55010.1    Uniprot ID   -
Organism   Streptococcus pneumoniae G54     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1742184..1752612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPG_1823 - 1742335..1742652 (-) 318 ACF55034.1 thioredoxin family protein -
  SPG_1824 - 1742649..1742939 (-) 291 ACF56819.1 conserved hypothetical protein -
  SPG_1825 - 1743233..1743376 (-) 144 ACF56293.1 conserved hypothetical protein -
  SPG_1826 - 1743585..1744259 (-) 675 ACF55898.1 conserved hypothetical protein -
  SPG_1827 - 1744265..1744711 (-) 447 ACF55351.1 LytTr DNA-binding domain -
  SPG_1828 - 1744825..1745328 (-) 504 ACF55236.1 conserved hypothetical protein -
  SPG_1829 - 1745325..1745687 (-) 363 ACF55222.1 conserved hypothetical protein -
  SPG_1830 rcrQ 1745753..1746784 (-) 1032 ACF55855.1 ABC transporter, ATP-binding protein Regulator
  SPG_1831 rcrP 1746791..1747168 (-) 378 ACF55386.1 ABC transporter, permease protein Regulator
  SPG_1832 rcrP 1747184..1747612 (-) 429 ACF55010.1 ABC transporter, permease protein Regulator
  SPG_1833 - 1747651..1747950 (-) 300 ACF54972.1 transcriptional regulator, point mutation -
  SPG_1834 - 1747963..1748100 (-) 138 ACF56689.1 transcriptional regulator, point mutation -
  SPG_1835 - 1748224..1748940 (-) 717 ACF56220.1 conserved hypothetical protein -
  SPG_1836 ply 1749821..1751236 (-) 1416 ACF56060.1 pneumolysin -
  SPG_1837 - 1751247..1751579 (-) 333 ACF55378.1 conserved hypothetical protein -
  SPG_1838 - 1751650..1752258 (-) 609 ACF56006.1 conserved hypothetical protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15969.85 Da        Isoelectric Point: 5.7969

>NTDB_id=20221 SPG_1832 ACF55010.1 1747184..1747612(-) (rcrP) [Streptococcus pneumoniae G54]
MILLAILFTCFSVYLELEVPTYISKITDLLGSQETNLDELWQPASMMMGMLFLAFLSVVAVGFFASRVAASYTSRLRSDI
FNRVLDYSQTEIKKFSIPSLLTRTTNDITQVQMLITMGLQVVTRGPIMAIWAIGKILGHSEY

Nucleotide


Download         Length: 429 bp        

>NTDB_id=20221 SPG_1832 ACF55010.1 1747184..1747612(-) (rcrP) [Streptococcus pneumoniae G54]
ATGATTTTACTAGCCATTCTCTTTACTTGCTTTTCGGTCTATCTAGAGTTGGAAGTGCCGACCTATATCTCGAAAATTAC
GGATTTGCTAGGTAGTCAAGAAACTAATTTAGATGAGTTGTGGCAGCCGGCAAGCATGATGATGGGAATGCTCTTTCTTG
CCTTCTTGTCCGTAGTTGCAGTTGGATTTTTTGCATCCCGAGTGGCGGCTTCTTATACTAGTAGGCTGAGAAGTGATATT
TTTAACCGAGTTTTGGATTACTCGCAGACAGAGATTAAGAAATTTTCAATTCCTAGCCTCTTGACGCGTACTACCAATGA
CATTACTCAAGTTCAAATGTTGATTACTATGGGCTTGCAAGTGGTAACGCGTGGTCCAATTATGGCTATCTGGGCTATTG
GGAAGATTTTAGGTCATTCAGAATACTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(3-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

58.865

99.296

0.585

Multiple sequence alignment