Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   AP3564_RS09390 Genome accession   NZ_CP017703
Coordinates   1910322..1910960 (+) Length   212 a.a.
NCBI ID   WP_094245268.1    Uniprot ID   A0A223E5J0
Organism   Aeribacillus pallidus strain KCTC3564     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1905322..1915960
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AP3564_RS09370 (AP3564_09195) - 1906564..1906704 (+) 141 WP_094245266.1 DegQ family regulator -
  AP3564_RS09375 (AP3564_09200) - 1906820..1907752 (+) 933 WP_094245267.1 polyprenyl synthetase family protein -
  AP3564_RS09380 comX 1907769..1907930 (+) 162 WP_082830253.1 competence pheromone ComX -
  AP3564_RS09385 (AP3564_09205) - 1907958..1910255 (+) 2298 WP_232515691.1 ATP-binding protein -
  AP3564_RS09390 (AP3564_09210) comA 1910322..1910960 (+) 639 WP_094245268.1 response regulator transcription factor Regulator
  AP3564_RS09395 (AP3564_09215) mnhG 1911004..1911369 (-) 366 WP_198318569.1 monovalent cation/H(+) antiporter subunit G -
  AP3564_RS09400 (AP3564_09220) - 1911350..1911637 (-) 288 WP_063387063.1 Na(+)/H(+) antiporter subunit F1 -
  AP3564_RS09405 (AP3564_09225) - 1911637..1912113 (-) 477 WP_094245269.1 Na+/H+ antiporter subunit E -
  AP3564_RS09410 (AP3564_09230) - 1912119..1913603 (-) 1485 WP_094245270.1 Na+/H+ antiporter subunit D -
  AP3564_RS09415 (AP3564_09235) - 1913600..1913938 (-) 339 WP_066249252.1 Na(+)/H(+) antiporter subunit C -
  AP3564_RS09420 (AP3564_09240) - 1913938..1914375 (-) 438 WP_066249254.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 24107.78 Da        Isoelectric Point: 4.7450

>NTDB_id=201998 AP3564_RS09390 WP_094245268.1 1910322..1910960(+) (comA) [Aeribacillus pallidus strain KCTC3564]
MIRILVIDDHPAVREGTKAILETDSEVEVDCLEPPYTAELMEKIDFLQYDAVLMDMNLGDINGIELAKQITSQEHQCKVL
LYTGYDVNDYMEEAISLGIHGVISKTESKEKILSHIRHALLGEIILSFDYVKKLIERQTFKSPSMKEANEPLTDREKMIL
MEVERGLTNQEIADKLHLSKRSIEYSLTSIFNKLHVSSRTEAVLIAKSEGIL

Nucleotide


Download         Length: 639 bp        

>NTDB_id=201998 AP3564_RS09390 WP_094245268.1 1910322..1910960(+) (comA) [Aeribacillus pallidus strain KCTC3564]
ATGATTCGTATTTTAGTGATTGACGATCATCCTGCTGTGAGAGAAGGGACAAAAGCGATATTGGAAACGGATTCTGAAGT
TGAAGTGGATTGTCTGGAGCCTCCTTATACGGCTGAACTTATGGAGAAAATCGATTTTTTGCAATATGATGCAGTTCTTA
TGGATATGAATTTAGGTGACATCAACGGGATTGAACTGGCAAAGCAAATAACATCTCAAGAACACCAATGCAAAGTCCTT
CTTTATACTGGATATGATGTCAATGATTATATGGAAGAAGCGATTTCCTTAGGCATTCATGGAGTAATCAGCAAGACGGA
GTCAAAAGAGAAAATATTATCTCACATTCGCCATGCGTTGCTTGGTGAGATTATTCTATCATTTGATTACGTAAAAAAAT
TGATTGAACGACAGACATTCAAGTCGCCATCTATGAAAGAAGCAAATGAGCCTTTAACAGATCGGGAAAAAATGATTTTA
ATGGAAGTCGAAAGAGGGTTAACAAATCAGGAAATAGCAGATAAGCTGCATTTAAGCAAAAGATCGATTGAATATAGTCT
GACTTCCATTTTTAATAAGCTGCACGTCAGCTCTCGGACAGAAGCCGTATTAATTGCGAAGTCAGAAGGCATTCTTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(151-206)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A223E5J0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

62.15

100

0.627

Multiple sequence alignment