Detailed information    

insolico Bioinformatically predicted

Overview


Name   rcrQ   Type   Regulator
Locus tag   CGL27_RS26605 Genome accession   NZ_CP022545
Coordinates   6255855..6257813 (+) Length   652 a.a.
NCBI ID   WP_107439114.1    Uniprot ID   -
Organism   Streptomyces sp. 11-1-2     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context


Location: 6250855..6262813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGL27_RS26585 (CGL27_26280) - 6251390..6252076 (-) 687 WP_078642750.1 DUF2993 domain-containing protein -
  CGL27_RS26590 (CGL27_26285) - 6252159..6253588 (-) 1430 Protein_5257 hypothetical protein -
  CGL27_RS26595 (CGL27_26290) - 6253600..6253875 (-) 276 WP_203348498.1 MoaD/ThiS family protein -
  CGL27_RS26600 (CGL27_26295) rcrP 6253997..6255739 (+) 1743 WP_162953074.1 ABC transporter ATP-binding protein Regulator
  CGL27_RS26605 (CGL27_26300) rcrQ 6255855..6257813 (+) 1959 WP_107439114.1 ABC transporter ATP-binding protein Regulator
  CGL27_RS26610 (CGL27_26305) - 6257852..6258796 (-) 945 WP_240450643.1 alpha/beta fold hydrolase -
  CGL27_RS26615 (CGL27_26310) - 6259051..6259863 (+) 813 WP_119990489.1 response regulator transcription factor -
  CGL27_RS26620 (CGL27_26315) - 6259887..6260909 (+) 1023 WP_119990491.1 LacI family DNA-binding transcriptional regulator -
  CGL27_RS26625 (CGL27_26320) - 6261455..6262561 (+) 1107 WP_119990493.1 trypsin-like peptidase domain-containing protein -

Sequence


Protein


Download         Length: 652 a.a.        Molecular weight: 70337.72 Da        Isoelectric Point: 5.9988

>NTDB_id=201528 CGL27_RS26605 WP_107439114.1 6255855..6257813(+) (rcrQ) [Streptomyces sp. 11-1-2]
MSGTSAPRRGPAPAAGPGRFMGGQPTERSLDFRGSGRRLLARLRPERGIALLVLALGTGSVALAVVGPKILGEATDLIFA
GLIGRQLPDGANKEQAVQWLRDRDQGTVADMVASMDVTPGQGIDFHAVGIVLLWATALYVVASLLGLVQARVATVIVQRA
VFRLREDVEHKLARLPLSYFDKQSRGEVLSRATNDIDNIQQTLQQTLSQIMASLLTIVGVLSMMFWISPLLALVALITVP
VSVWVTTRIGKRAQPQFVAQWKTTGKLNAHIEEMYTGHSLVKVFGREKESAELFREQNDKLYAAGFKAQSISGLIQPAMM
FIGNLNYVLVAVVGGLRVASGALSIGDVQAFVQYSRQFSQPLTQVASMANMVQSGVASAERVFELLDAPEQSAEPVDPRR
PEAVRGQVAFEDVSFRYQPDTPLIDGLSLSVRPGQTVAIVGPTGAGKTTLVNLLMRFYEVSGGRITLDGVDIAEMSREEL
RSHIGMVLQDTWLFGGTIAENIAYGAQGATFEKIVEAAKATYVDRFVRTLPDGYDSVIDEEGSNVSAGEKQLITIARAFL
SEPSILVLDEATSSVDTRTEVLIQRAMASLRSGRTSFVIAHRLSTIRDADVILVMESGRIVEQGSHDALLAAGGAYARLY
ASQFAEPVAEAE

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=201528 CGL27_RS26605 WP_107439114.1 6255855..6257813(+) (rcrQ) [Streptomyces sp. 11-1-2]
ATGAGTGGCACCTCGGCACCCCGCAGGGGTCCGGCGCCCGCCGCCGGACCCGGCCGCTTCATGGGCGGGCAGCCGACCGA
GCGGTCCCTGGACTTCCGCGGCTCCGGCCGCCGGCTGCTGGCCCGGCTCCGCCCCGAGCGCGGTATCGCGCTGCTGGTGC
TCGCGCTGGGCACGGGCAGCGTCGCGCTCGCGGTGGTGGGTCCGAAGATCCTCGGCGAGGCGACCGACCTGATCTTCGCG
GGCCTCATCGGACGGCAACTGCCTGACGGGGCGAACAAGGAGCAGGCCGTCCAGTGGCTGCGCGACAGGGACCAGGGCAC
GGTCGCCGACATGGTGGCCTCGATGGACGTCACCCCCGGCCAGGGCATCGACTTCCACGCGGTCGGCATCGTGCTGCTGT
GGGCCACGGCGCTGTACGTCGTCGCCTCGCTCCTGGGCCTGGTGCAGGCGCGGGTGGCCACGGTCATCGTCCAGCGCGCG
GTCTTCCGGCTGCGCGAGGACGTGGAGCACAAGCTGGCGCGGCTGCCGCTGTCGTACTTCGACAAGCAGTCGCGCGGTGA
GGTGCTCTCCCGCGCCACCAACGACATCGACAACATCCAGCAGACGCTGCAGCAGACCCTCAGCCAGATCATGGCCTCGC
TGCTGACGATCGTGGGCGTGCTGTCGATGATGTTCTGGATCTCGCCGCTGCTGGCGCTGGTGGCGCTGATCACCGTCCCG
GTCTCGGTGTGGGTGACGACGCGCATCGGCAAGCGCGCCCAGCCGCAGTTCGTCGCCCAGTGGAAGACCACGGGCAAGCT
CAACGCCCATATCGAGGAGATGTACACCGGCCACTCACTGGTGAAGGTCTTCGGGCGGGAGAAGGAGTCCGCGGAGCTGT
TCCGGGAGCAGAACGACAAGCTCTACGCGGCGGGCTTCAAGGCCCAGTCCATCTCCGGGCTGATCCAGCCCGCGATGATG
TTCATCGGGAACCTCAACTATGTGCTGGTGGCCGTGGTCGGCGGGCTCCGGGTGGCCTCCGGCGCGCTGTCGATCGGCGA
TGTCCAGGCGTTCGTCCAGTACTCCCGGCAGTTCAGCCAGCCGCTCACCCAGGTGGCCTCCATGGCCAACATGGTGCAGT
CGGGCGTGGCCTCCGCCGAGCGGGTCTTCGAGCTGCTGGACGCGCCCGAGCAGAGCGCCGAGCCGGTGGACCCGCGGCGG
CCGGAGGCGGTGCGGGGGCAGGTCGCGTTCGAGGACGTCTCCTTCCGCTACCAGCCGGACACGCCGCTCATCGACGGTCT
GTCGCTGTCCGTGCGGCCCGGGCAGACCGTGGCCATCGTCGGCCCGACCGGCGCGGGGAAGACCACCCTGGTCAATCTGC
TGATGCGGTTCTACGAGGTCAGCGGCGGGCGGATCACGCTGGACGGGGTGGACATCGCCGAGATGTCACGGGAGGAGCTG
CGCTCCCATATCGGGATGGTGCTGCAGGACACCTGGCTGTTCGGCGGGACGATCGCAGAGAACATCGCGTACGGCGCGCA
AGGGGCGACCTTCGAGAAGATCGTCGAGGCGGCGAAGGCCACCTATGTGGACCGCTTCGTACGGACCCTGCCGGACGGCT
ACGACTCGGTGATCGACGAGGAGGGCTCCAATGTCAGCGCCGGGGAGAAGCAGCTGATCACGATCGCCCGGGCGTTCCTC
TCCGAGCCGTCGATCCTGGTGCTGGACGAGGCCACCAGCTCGGTCGACACCCGTACCGAGGTCCTCATCCAGCGGGCGAT
GGCCTCGCTGCGGAGCGGCCGTACCAGCTTCGTGATCGCGCACCGGCTGTCGACCATCCGGGACGCGGACGTGATCCTGG
TGATGGAGTCGGGGCGGATCGTGGAGCAGGGCTCGCATGACGCGCTGCTCGCGGCGGGCGGTGCGTACGCCCGGCTGTAC
GCGTCCCAGTTCGCGGAGCCGGTGGCGGAGGCCGAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

41.491

94.632

0.393


Multiple sequence alignment