Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   CG450_RS12760 Genome accession   NZ_CP022477
Coordinates   2404487..2404918 (-) Length   143 a.a.
NCBI ID   WP_003181967.1    Uniprot ID   Q65JE4
Organism   Bacillus licheniformis strain BL-010     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 2399487..2409918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CG450_RS12750 hexA 2400976..2403585 (-) 2610 WP_011197985.1 DNA mismatch repair protein MutS Machinery gene
  CG450_RS12755 cotE 2403696..2404244 (-) 549 WP_003181968.1 outer spore coat protein CotE -
  CG450_RS12760 ymcA 2404487..2404918 (-) 432 WP_003181967.1 RicAFT regulatory complex protein RicA family protein Regulator
  CG450_RS12765 miaB 2404920..2406449 (-) 1530 WP_003181965.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  CG450_RS12770 - 2406593..2407768 (-) 1176 WP_009328481.1 glycine C-acetyltransferase -
  CG450_RS12775 tdh 2407784..2408827 (-) 1044 WP_085959523.1 L-threonine 3-dehydrogenase -
  CG450_RS12780 - 2408952..2409872 (-) 921 WP_021837473.1 dipeptidase -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16031.27 Da        Isoelectric Point: 5.0583

>NTDB_id=201001 CG450_RS12760 WP_003181967.1 2404487..2404918(-) (ymcA) [Bacillus licheniformis strain BL-010]
MTLYTKKEIVAKARELAKMIAETEEVDFFKKAEAQINENAKITGIINQIKALQKQAVNFKHYEKHEALKQTEAKIDALQE
ELDEIPIIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKNSSPSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=201001 CG450_RS12760 WP_003181967.1 2404487..2404918(-) (ymcA) [Bacillus licheniformis strain BL-010]
GTGACGCTTTATACGAAAAAAGAGATTGTTGCAAAAGCGCGGGAGCTCGCAAAAATGATTGCAGAAACGGAAGAAGTCGA
CTTTTTCAAAAAAGCGGAGGCACAGATTAATGAGAATGCCAAAATAACGGGCATAATCAACCAAATCAAAGCCCTGCAAA
AGCAAGCCGTCAACTTTAAACATTACGAAAAGCACGAAGCGCTTAAACAAACGGAAGCAAAGATTGACGCGCTTCAGGAA
GAGCTTGACGAGATTCCGATCATTCAAGAGTTCAGAGACTCCCAAATGGAAGTCAACGACCTTCTTCAGCTTGTCGCGCA
TACAATATCAAACCAAGTGACAAACGAGATCATCACATCGACCGGGGGAGACCTGCTGAAAGGCGAGACCGGTTCAAAAG
TGAAAAATTCATCACCGAGCTGTTCTCTATAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q65JE4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

86.713

100

0.867

Multiple sequence alignment