Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   CGZ53_RS04665 Genome accession   NZ_CP022435
Coordinates   896729..897799 (+) Length   356 a.a.
NCBI ID   WP_012658412.1    Uniprot ID   B9DUD2
Organism   Streptococcus uberis strain NZ01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 891729..902799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGZ53_RS04645 (CGZ53_04645) - 893870..895084 (+) 1215 WP_046390581.1 amidohydrolase -
  CGZ53_RS04650 (CGZ53_04650) - 895090..895872 (+) 783 WP_046390582.1 threonine/serine exporter ThrE family protein -
  CGZ53_RS04655 (CGZ53_04655) - 895863..896303 (+) 441 WP_037592165.1 threonine/serine exporter family protein -
  CGZ53_RS04660 (CGZ53_04660) - 896322..896540 (+) 219 WP_037592164.1 hypothetical protein -
  CGZ53_RS04665 (CGZ53_04665) xerS 896729..897799 (+) 1071 WP_012658412.1 tyrosine recombinase XerS Machinery gene
  CGZ53_RS04670 (CGZ53_04670) - 897915..898442 (-) 528 WP_012658413.1 NUDIX hydrolase -
  CGZ53_RS04675 (CGZ53_04675) - 898454..898789 (-) 336 WP_046390887.1 DUF5655 domain-containing protein -
  CGZ53_RS04680 (CGZ53_04680) - 898795..899738 (-) 944 Protein_874 sensor histidine kinase -
  CGZ53_RS04685 (CGZ53_04685) braR 899735..900400 (-) 666 WP_046390888.1 response regulator transcription factor Regulator
  CGZ53_RS04690 (CGZ53_04690) - 900446..902410 (-) 1965 WP_046390889.1 ABC transporter permease -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41596.71 Da        Isoelectric Point: 9.4921

>NTDB_id=200694 CGZ53_RS04665 WP_012658412.1 896729..897799(+) (xerS) [Streptococcus uberis strain NZ01]
MRRELLLEKIEEYKAIMPWFVLDYYQSKLSVPYSFTTLYEYLKEYKRFFDWLIDSGISDAPRIADIKLDVLEHLTKKDME
SFILYLRERPSLNTYSTKSGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVATKKKKETLASRAENIKQK
LFLGDETMEFLDYVDCEYENKLSNRAKSSFQKNKERDLAIIALLLASGVRLSEAVNLDLKDVNLKMMVIEVTRKGGKRDS
VNVASFAKPYLEHYLEIRQKRYKADKQDQAFFLTEYRGVPNRIDASSIEKMVGKYSQDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDKL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=200694 CGZ53_RS04665 WP_012658412.1 896729..897799(+) (xerS) [Streptococcus uberis strain NZ01]
ATGCGACGTGAATTACTGTTAGAAAAAATTGAAGAATACAAAGCAATCATGCCATGGTTTGTTTTAGACTATTACCAATC
CAAATTATCTGTGCCTTACAGTTTCACGACCTTATATGAATACCTTAAAGAATACAAACGCTTTTTTGATTGGCTCATTG
ACTCTGGAATTTCAGATGCTCCCAGAATTGCTGATATAAAGCTAGATGTCTTGGAACATTTGACAAAAAAAGATATGGAA
TCTTTTATTCTTTATTTGCGTGAAAGACCGTCACTAAACACCTATTCAACAAAATCTGGCGTCTCTCAAACAACCATCAA
TCGTACCTTATCAGCCCTCTCCAGCCTCTATAAATATCTCACTGAGGAAGTTGAAAACGATCAAGGGGAACCATACTTTT
ATCGAAACGTTATGAAAAAGGTTGCTACCAAGAAGAAAAAAGAAACCTTAGCCTCAAGAGCAGAAAATATCAAACAAAAG
CTCTTTCTAGGTGATGAAACCATGGAGTTTCTCGATTATGTAGATTGTGAATATGAAAACAAGCTATCAAATAGAGCAAA
ATCATCATTCCAAAAAAATAAAGAACGCGATTTAGCCATCATAGCCCTACTTCTGGCTTCTGGCGTCCGACTCTCCGAAG
CCGTTAATCTCGACTTAAAAGATGTCAATCTCAAAATGATGGTTATTGAAGTGACTCGAAAGGGTGGGAAACGTGACTCC
GTTAACGTAGCATCTTTTGCTAAACCTTACCTTGAGCATTACTTGGAAATTCGTCAAAAACGCTATAAAGCTGACAAACA
AGACCAAGCATTTTTCCTAACGGAGTATCGTGGGGTCCCCAACCGCATTGATGCTTCAAGTATTGAAAAAATGGTGGGCA
AATACTCACAAGATTTTAAAATCCGAGTAACTCCTCATAAGTTAAGGCATACGCTTGCTACCAGGCTTTACGATGCCACC
AAGTCTCAGGTATTAGTCAGTCATCAACTAGGCCATGCCTCTACACAAGTTACAGATCTATATACCCATATTGTCAATGA
CGAACAAAAGAATGCCTTAGATAAATTATAA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(187-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B9DUD2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

82.584

100

0.826