Detailed information NTG0020010

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: SDD27957_00240
• Genome accession: CM001076
• Coordinates: 60032..61030 (+)
• Length: 332 a.a.
• NCBI ID: EFY01756.1
• Uniprot ID: -
• Organism: Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 55032..66030

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SDD27957_00215	-	55884..56372 (+)	489	EFY01751.1	phosphoribosylaminoimidazole carboxylase catalytic subunit	-
SDD27957_00220	-	56359..57444 (+)	1086	EFY01752.1	phosphoribosylaminoimidazole carboxylase ATPase subunit	-
SDD27957_00225	-	57454..58746 (+)	1293	EFY01753.1	adenylosuccinate lyase	-
SDD27957_00230	comR	58888..59799 (+)	912	EFY01754.1	Transcriptional regulator	Regulator
SDD27957_00235	comS	59886..59981 (+)	96	EFY01755.1	hypothetical protein	Regulator
SDD27957_00240	ruvB	60032..61030 (+)	999	EFY01756.1	Holliday junction DNA helicase RuvB	Machinery gene
SDD27957_00245	-	61165..61596 (+)	432	EFY01757.1	protein tyrosine phosphatase	-
SDD27957_00250	-	61625..62026 (+)	402	EFY01758.1	hypothetical protein	-
SDD27957_00255	-	62023..63798 (+)	1776	EFY01759.1	acyltransferase	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37344.82 Da
• Isoelectric Point: 4.5951

>NTDB_id=20010 SDD27957_00240 EFY01756.1 60032..61030(+) (ruvB) [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
MTRILDNDVMGDEELVERTLRPKYLREYIGQDKVKEQLNIFIEAAKLRDESLDHVLLFGPPGLGKTTMAFVIANELGVNL
KQTSGPAIEKAGDLVAILNDLEPGDVLFIDEIHRLPMAVEEVLYSAMEDFYIDIMIGAGDTSRSVHLDLPPFTLIGATTR
AGMLSNPLRARFGITGHMEYYQEADLTEIIERTANIFDMEIVHEAAQELACRSRGTPRIANRLLKRVRDYAQIVGDGVIT
AQITDKALTMLDVDREGLDYVDQKILRTMIEMYQGGPVGLGTLSVNIAEERDTVEDMYEPYLIQKGFLMRTRTGRVVTEK
AYRHLGYPYPSN

Nucleotide

• Length: 999 bp

>NTDB_id=20010 SDD27957_00240 EFY01756.1 60032..61030(+) (ruvB) [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
ATGACTAGAATTTTAGATAATGATGTAATGGGGGATGAAGAGCTTGTTGAGCGAACGCTTCGTCCGAAGTATTTGCGTGA
GTACATTGGGCAAGATAAGGTTAAGGAGCAATTAAACATTTTTATTGAAGCGGCTAAGCTTCGTGATGAATCTTTAGATC
ATGTGTTGTTGTTTGGCCCTCCAGGTTTAGGGAAAACCACAATGGCATTTGTGATTGCTAATGAATTAGGGGTTAATCTG
AAACAAACATCTGGTCCGGCAATCGAGAAGGCTGGTGATTTGGTAGCTATTTTGAATGATCTGGAACCAGGAGATGTGCT
CTTTATTGATGAAATTCATCGTCTGCCTATGGCAGTCGAAGAAGTATTGTACAGTGCTATGGAAGATTTTTACATCGATA
TCATGATTGGTGCTGGGGACACTAGTCGAAGTGTTCATTTGGATTTACCACCTTTTACATTGATTGGAGCTACAACACGA
GCTGGGATGTTGTCAAATCCTTTGCGAGCTCGATTTGGCATTACTGGACACATGGAATACTATCAGGAAGCTGATTTGAC
TGAAATTATCGAACGAACAGCTAATATTTTTGACATGGAAATTGTTCATGAAGCGGCTCAAGAGTTAGCTTGCCGTAGTC
GGGGAACACCGCGTATTGCTAATAGATTGTTAAAGCGGGTACGTGATTATGCTCAGATTGTTGGAGATGGCGTCATCACG
GCTCAGATTACAGACAAAGCCCTAACCATGCTTGATGTTGACCGAGAAGGTCTTGATTATGTAGATCAGAAGATTTTACG
AACCATGATTGAAATGTATCAGGGTGGACCGGTTGGGTTAGGCACTTTATCAGTTAATATTGCAGAAGAACGTGATACAG
TTGAAGACATGTACGAACCTTATCTGATTCAAAAAGGATTTCTAATGCGTACACGAACTGGTCGTGTGGTGACGGAAAAA
GCCTATCGTCATCTTGGTTATCCATATCCGTCTAACTAA

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-325)

• RuvB AAA lid domain (AAA_lid_4) (181-254)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	89.058	99.096	0.883
ruvB	Streptococcus pneumoniae R6	88.754	99.096	0.88
ruvB	Streptococcus pneumoniae D39	88.754	99.096	0.88
ruvB	Bacillus subtilis subsp. subtilis str. 168	59.451	98.795	0.587
ruvB	Helicobacter pylori 26695	50.613	98.193	0.497
ruvB	Synechocystis sp. PCC 6803	49.686	95.783	0.476