Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   CD799_RS25885 Genome accession   NZ_CP022002
Coordinates   5389350..5389679 (-) Length   109 a.a.
NCBI ID   WP_003104586.1    Uniprot ID   Q9HZ87
Organism   Pseudomonas aeruginosa strain Pa1242     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5384350..5394679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CD799_RS25870 (CD799_25870) uvrB 5385736..5387748 (-) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene
  CD799_RS25875 (CD799_25875) - 5387936..5389132 (+) 1197 WP_003104588.1 amino acid aminotransferase -
  CD799_RS25885 (CD799_25885) comEA/comE1 5389350..5389679 (-) 330 WP_003104586.1 ComEA family DNA-binding protein Machinery gene
  CD799_RS25890 (CD799_25890) - 5389870..5391867 (-) 1998 WP_003119734.1 polysaccharide biosynthesis protein -
  CD799_RS25895 (CD799_25895) - 5392491..5393539 (-) 1049 Protein_5038 IS3 family transposase -
  CD799_RS25900 (CD799_25900) - 5393617..5394634 (-) 1018 Protein_5039 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11351.31 Da        Isoelectric Point: 8.0459

>NTDB_id=199158 CD799_RS25885 WP_003104586.1 5389350..5389679(-) (comEA/comE1) [Pseudomonas aeruginosa strain Pa1242]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=199158 CD799_RS25885 WP_003104586.1 5389350..5389679(-) (comEA/comE1) [Pseudomonas aeruginosa strain Pa1242]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9HZ87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385

Multiple sequence alignment