Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   CD799_RS03440 Genome accession   NZ_CP022002
Coordinates   717103..717747 (-) Length   214 a.a.
NCBI ID   WP_003085214.1    Uniprot ID   A0A0H2ZLY6
Organism   Pseudomonas aeruginosa strain Pa1242     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 712103..722747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CD799_RS03405 (CD799_03405) - 712227..712457 (+) 231 WP_010895513.1 hypothetical protein -
  CD799_RS03410 (CD799_03410) - 712553..713605 (+) 1053 WP_003113178.1 pyocin knob domain-containing protein -
  CD799_RS03415 (CD799_03415) - 713605..713808 (+) 204 WP_191985141.1 hypothetical protein -
  CD799_RS03420 (CD799_03420) - 713903..714133 (+) 231 WP_003113176.1 hypothetical protein -
  CD799_RS03425 (CD799_03425) - 714552..715157 (+) 606 WP_003113175.1 aminodeoxychorismate/anthranilate synthase component II -
  CD799_RS03430 (CD799_03430) trpD 715159..716208 (+) 1050 WP_003085203.1 anthranilate phosphoribosyltransferase -
  CD799_RS03435 (CD799_03435) trpC 716205..717041 (+) 837 WP_003085205.1 indole-3-glycerol phosphate synthase TrpC -
  CD799_RS03440 (CD799_03440) crp 717103..717747 (-) 645 WP_003085214.1 cAMP-activated global transcriptional regulator CRP Regulator
  CD799_RS03445 (CD799_03445) - 718018..718440 (+) 423 WP_003085219.1 OsmC family protein -
  CD799_RS03450 (CD799_03450) speD 718760..719554 (+) 795 WP_003101641.1 adenosylmethionine decarboxylase -
  CD799_RS03455 (CD799_03455) coq7 719609..720256 (-) 648 WP_003085224.1 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase -
  CD799_RS03460 (CD799_03460) - 720356..720694 (-) 339 WP_019725814.1 histidine triad nucleotide-binding protein -
  CD799_RS03465 (CD799_03465) - 720773..722254 (+) 1482 WP_003117981.1 AAA family ATPase -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24225.01 Da        Isoelectric Point: 8.0525

>NTDB_id=199086 CD799_RS03440 WP_003085214.1 717103..717747(-) (crp) [Pseudomonas aeruginosa strain Pa1242]
MVAITHTPKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEK
EGSEQERSAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMADRLRKTTRKVGDLAFLDVTGRVARTLLDLCQQPD
AMTHPDGMQIKITRQEIGRIVGCSREMVGRVLKSLEEQGLVHVKGKTMVVFGTR

Nucleotide


Download         Length: 645 bp        

>NTDB_id=199086 CD799_RS03440 WP_003085214.1 717103..717747(-) (crp) [Pseudomonas aeruginosa strain Pa1242]
ATGGTAGCTATTACCCACACACCCAAACTCAAACACCTAGACAAGCTGCTCGCACACTGTCACCGCCGCCGCTACACCGC
AAAGAGCACCATCATCTATGCCGGCGATCGCTGCGAAACGCTGTTCTTCATCATCAAGGGTTCGGTCACCATCCTCATCG
AGGACGACGACGGCCGCGAAATGATCATCGGCTACCTCAACAGCGGTGATTTCTTCGGCGAGCTGGGATTGTTCGAAAAG
GAAGGCAGCGAACAGGAACGCAGCGCCTGGGTTCGTGCCAAGGTGGAATGCGAAGTCGCCGAGATCAGCTATGCGAAGTT
CCGCGAACTGTCGCAGCAGGACTCGGAGATCCTCTACACCCTCGGCAGCCAGATGGCCGACCGCCTGCGCAAGACCACCC
GCAAGGTGGGCGACCTGGCCTTCCTCGACGTCACCGGACGCGTCGCCCGCACCTTGCTGGACCTGTGCCAGCAACCGGAC
GCCATGACCCACCCGGACGGCATGCAGATCAAGATCACCCGCCAGGAGATCGGCCGGATCGTCGGCTGCTCGCGGGAAAT
GGTCGGACGCGTGCTGAAGAGCCTGGAGGAGCAGGGCCTGGTGCATGTGAAAGGAAAGACCATGGTGGTCTTCGGCACCC
GCTGA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(22-114)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(146-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZLY6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

67.327

94.393

0.636
  crp Haemophilus influenzae Rd KW20

60.396

94.393

0.57
  crp Acinetobacter baumannii D1279779

54.545

92.523

0.505

Multiple sequence alignment