Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   BJD96_RS06360 Genome accession   NZ_CP017460
Coordinates   1346822..1349209 (+) Length   795 a.a.
NCBI ID   WP_096809350.1    Uniprot ID   A0A291JK47
Organism   Staphylococcus nepalensis strain JS1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1341822..1354209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJD96_RS06340 (BJD96_06255) sal(E) 1342013..1343644 (+) 1632 WP_096809342.1 ABC-F type ribosomal protection protein Sal(E) -
  BJD96_RS06345 (BJD96_06260) - 1343705..1344847 (+) 1143 WP_096809344.1 cysteine desulfurase family protein -
  BJD96_RS06350 (BJD96_06265) mnmA 1344848..1345960 (+) 1113 WP_096809345.1 tRNA 2-thiouridine(34) synthase MnmA -
  BJD96_RS06355 (BJD96_06270) - 1346152..1346817 (+) 666 WP_096809347.1 tetratricopeptide repeat protein -
  BJD96_RS06360 (BJD96_06275) recD2 1346822..1349209 (+) 2388 WP_096809350.1 ATP-dependent RecD-like DNA helicase Machinery gene
  BJD96_RS06365 (BJD96_06280) alaS 1349552..1352182 (+) 2631 WP_096809351.1 alanine--tRNA ligase -
  BJD96_RS06370 (BJD96_06285) - 1352251..1352511 (+) 261 WP_096809354.1 IreB family regulatory phosphoprotein -
  BJD96_RS06375 (BJD96_06290) ruvX 1352515..1352943 (+) 429 WP_096809356.1 Holliday junction resolvase RuvX -
  BJD96_RS06380 (BJD96_06295) - 1352960..1353286 (+) 327 WP_096809359.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 795 a.a.        Molecular weight: 89626.06 Da        Isoelectric Point: 4.5619

>NTDB_id=198487 BJD96_RS06360 WP_096809350.1 1346822..1349209(+) (recD2) [Staphylococcus nepalensis strain JS1]
MDNPTLFNNSMIKGTVDAILFQNKDNFYTVLKVDTIESNETFDSMPTVVGFFPEIAEGDVYTFKGQVVSHPKYGKQLKAE
TFEKELPQTKEAIVSYLSSDLFKGIGKKTAQNIVNALGENTISDILNDPSVLEKVPSLPKKKQKQIAEQIASNQETEQII
IRLHDLGFGPKLAMAIYQVYLGDTLNVVENKPYQLVYDVKGIGFNKADTLARNVGIQFNDNERLKAGLLYVLEEECIKQG
HTYLPTQNVLEMTHDMLSQPPSEMIDRQQLEDMVQYLVEESKLVKQENELAVPSLYYSELKSVQNLYRNYTYTNKLKEIE
QSELLLEIGEIEQRNEVTYANSQREALQTAINSKVMLLTGGPGTGKTTVIKGIVELYAEIHGLSLDYDDYQNDDYPVVLA
APTGRASKRLAESTGLEAMTIHRLIGWNQDTQPEDILDNEISAKLIIIDEMSMVDTWLFHQFLSAVPIDAQVILVGDEDQ
LPSVGPGQVFKDLIDSKVIPRVNLTEVYRQQDGSSIIELAHRMKLGESIDITQRFHDRNFINCSTEQIPTVVEKVVSSAV
NKGYDMSDIQVLAPMYKGSAGIKKLNAVLQTILNPKDKDTREIEFGEVVFRKGDKVLQLVNRPSDNIFNGDIGVIVGIFW
AKENALNKDVLVVDFDGNEITFVRKDLLELTHAYCTSIHKSQGSEFPIVIMPMVKQYYRMLQKPILYTGLTRAKQSLVFL
GDPKAFEIGLNTHGQVRMTQLCTFLKTYFNNEDTDEAVDVGDTFDSTIVLTEENIYNINPMINMGDISPYDFVEH

Nucleotide


Download         Length: 2388 bp        

>NTDB_id=198487 BJD96_RS06360 WP_096809350.1 1346822..1349209(+) (recD2) [Staphylococcus nepalensis strain JS1]
ATGGATAACCCTACACTATTTAACAACTCAATGATTAAAGGTACTGTAGATGCTATCTTATTCCAGAACAAAGACAATTT
TTATACTGTTTTAAAGGTAGATACGATTGAATCTAATGAAACATTTGATTCAATGCCTACAGTTGTAGGGTTCTTTCCAG
AAATTGCTGAAGGCGACGTCTACACCTTTAAAGGACAAGTTGTTTCACATCCTAAGTACGGAAAACAATTAAAGGCAGAG
ACCTTCGAAAAAGAATTACCGCAAACCAAAGAAGCAATCGTTAGCTATTTATCGAGTGATTTATTCAAGGGTATAGGTAA
AAAAACAGCACAAAATATTGTGAATGCACTTGGAGAAAACACAATTTCAGATATTTTAAATGATCCATCTGTATTAGAAA
AAGTACCAAGTTTACCTAAGAAAAAGCAAAAACAAATTGCTGAACAAATTGCCAGTAATCAAGAAACAGAACAAATTATT
ATTCGTTTACATGACTTAGGGTTTGGTCCTAAACTTGCTATGGCCATTTATCAAGTTTATCTTGGAGATACGTTGAATGT
TGTAGAAAATAAACCATATCAATTAGTATATGATGTCAAAGGTATTGGCTTTAATAAAGCTGATACGTTAGCGCGTAATG
TGGGTATTCAATTTAATGATAATGAACGTTTGAAAGCTGGATTATTATATGTGTTAGAAGAAGAATGTATTAAACAAGGA
CATACTTATTTGCCGACTCAGAATGTATTAGAAATGACACACGATATGCTATCACAGCCACCAAGTGAAATGATTGATCG
GCAACAATTAGAAGATATGGTGCAATATCTTGTTGAAGAATCGAAATTAGTTAAACAAGAAAATGAACTTGCTGTGCCAA
GTTTATATTATTCAGAGTTGAAAAGTGTACAAAACTTATACCGTAATTACACATATACCAACAAATTAAAAGAAATTGAA
CAATCGGAATTATTGCTTGAAATTGGCGAAATTGAACAACGTAATGAGGTAACTTATGCAAATTCACAAAGAGAGGCGTT
ACAAACTGCAATCAATTCCAAAGTCATGCTTTTAACAGGGGGCCCTGGTACAGGGAAAACGACTGTTATTAAAGGTATTG
TTGAATTATATGCAGAAATTCATGGTTTATCTCTCGATTATGATGACTATCAAAATGATGATTACCCAGTTGTATTAGCA
GCACCAACTGGAAGAGCTTCAAAACGCTTGGCTGAGTCCACAGGATTAGAAGCAATGACTATACATCGTTTGATTGGATG
GAACCAAGATACACAACCAGAAGATATATTAGATAATGAAATTTCGGCAAAGCTGATTATCATTGATGAAATGTCTATGG
TAGATACATGGTTATTCCATCAATTTTTGAGCGCTGTCCCGATTGACGCTCAAGTTATATTAGTAGGCGATGAAGATCAA
TTGCCTTCAGTTGGTCCAGGGCAAGTGTTTAAAGACTTGATTGATTCTAAAGTGATACCAAGAGTCAATTTAACCGAAGT
GTATAGACAACAAGATGGCTCGAGTATTATAGAACTCGCACATAGAATGAAATTAGGTGAGTCTATAGACATTACACAAC
GATTCCATGATCGTAACTTTATAAACTGTTCAACAGAACAAATTCCAACAGTAGTTGAAAAAGTCGTCTCAAGTGCTGTC
AACAAAGGTTATGACATGAGTGATATACAAGTATTAGCTCCCATGTATAAAGGCTCTGCAGGTATTAAAAAATTAAATGC
TGTATTACAAACTATTTTAAATCCTAAAGATAAAGACACACGAGAGATTGAATTTGGAGAAGTTGTTTTCAGAAAAGGAG
ACAAAGTATTACAACTGGTAAATAGACCGAGCGATAATATATTTAATGGTGATATAGGTGTCATTGTTGGCATATTTTGG
GCAAAAGAAAACGCGTTAAATAAAGACGTTTTGGTTGTTGATTTCGATGGTAATGAGATTACATTCGTTAGAAAAGATTT
ATTAGAGTTGACACATGCATACTGTACATCTATTCATAAATCACAAGGTTCTGAATTTCCAATTGTAATCATGCCAATGG
TTAAACAATATTATAGAATGTTACAAAAACCCATATTATATACAGGGTTAACAAGAGCAAAGCAATCGCTTGTCTTTTTG
GGAGACCCAAAAGCTTTTGAAATAGGTTTGAACACACATGGCCAAGTAAGAATGACACAGTTATGTACATTTTTAAAAAC
GTATTTTAATAACGAAGATACTGATGAAGCGGTAGACGTTGGTGATACGTTTGATTCAACCATTGTTTTAACAGAAGAAA
ATATTTATAATATTAACCCGATGATTAATATGGGAGATATTTCTCCCTATGATTTTGTTGAACATTGA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(672-719)

AAA domain (AAA_30)

(339-545)

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-655)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A291JK47

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

50.694

99.748

0.506

Multiple sequence alignment