Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   A4W87_RS04380 Genome accession   NZ_CP017273
Coordinates   851893..853959 (+) Length   688 a.a.
NCBI ID   WP_251932818.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain TMW 1.1396     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 846893..858959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W87_RS04350 (A4W87_04305) - 847964..848254 (+) 291 WP_076632420.1 YlbG family protein -
  A4W87_RS04355 (A4W87_04310) rsmD 848259..848813 (+) 555 WP_011374774.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  A4W87_RS04360 (A4W87_04315) coaD 848826..849323 (+) 498 WP_011374773.1 pantetheine-phosphate adenylyltransferase -
  A4W87_RS04365 (A4W87_04320) - 849325..850371 (+) 1047 WP_011374772.1 SepM family pheromone-processing serine protease -
  A4W87_RS04370 (A4W87_04325) comEA 850443..851150 (+) 708 WP_231952379.1 helix-hairpin-helix domain-containing protein Machinery gene
  A4W87_RS04375 (A4W87_04330) - 851208..851696 (+) 489 WP_011374770.1 ComE operon protein 2 -
  A4W87_RS04380 (A4W87_04335) comEC 851893..853959 (+) 2067 WP_251932818.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  A4W87_RS04385 (A4W87_04340) holA 853956..854984 (+) 1029 WP_076632418.1 DNA polymerase III subunit delta -
  A4W87_RS04390 (A4W87_04345) rpsT 855053..855307 (-) 255 WP_011374767.1 30S ribosomal protein S20 -
  A4W87_RS04395 (A4W87_04350) rpsO 855586..855855 (+) 270 WP_011374766.1 30S ribosomal protein S15 -
  A4W87_RS04400 (A4W87_04355) - 856084..857802 (+) 1719 WP_076632417.1 ribonuclease J -
  A4W87_RS04405 (A4W87_04360) - 857891..858838 (+) 948 WP_011374764.1 hypothetical protein -

Sequence

Protein


Download         Length: 688 a.a.        Molecular weight: 77744.96 Da        Isoelectric Point: 10.0659

>NTDB_id=197225 A4W87_RS04380 WP_251932818.1 851893..853959(+) (comEC) [Latilactobacillus sakei strain TMW 1.1396]
MTQPQQPVAQYFKVQPDAIQVAGDSVQLTAIGQQDGQTIKAYYRCQTFAEKRRWQQVRHPVLFYGEKDFKRIQGATNQNE
FDYARFLAQQKRCFYQLTLAKKTTFALRRPSSGLDWLHYWRQTCALYLRKLPTALRFHAQTLLLGLREAQVDHYQVVLGH
LGIIHLLSLSGLHVFYLVQVIRWCATYCRIPREWLNCMLFGLLPVYALLVGGTTSISRAIALILSRLLCKQLGIRQSRLD
SWSLVLLVNLFWQPYLLHSMGGILSYLMAFALIYIGEGSTFKVAYWLSLLSLPVCLRFNYRWHVLTIMMNALVTPIYLPI
VLGLVIVASVMLPVSNLVVNGCEWLLQLIYKGLGLVVQIPHAMITFGKIPLLPLLLIVTVSLLLIDGQAISNQWRKRLKR
TLVSLYLASFLAIHFNPTGRVVMFDIGQGDSLLIQTPFNRHQLLIDTGGRLALPQAAWQRRAQVSRAEKVTVNYLYSQGV
DHIDAVALSHQDADHIGDLNQILKQIRVDRIICAAGLPQNRQFQRQIRPFLATVQIEPYLAGAAFKVGSQKFNVLAPTKP
GKGENSDSLVLQAQIGGASWLFTGDLEQEGERAIIERYPQLTVDYLKVGHHGSKTASDPTVIKKLHLKGALISTGRENRY
GHPHQETLTTLQAAKVPYWLTAQQGMLTWAYGPGQSEKLQTTIKDSEK

Nucleotide


Download         Length: 2067 bp        

>NTDB_id=197225 A4W87_RS04380 WP_251932818.1 851893..853959(+) (comEC) [Latilactobacillus sakei strain TMW 1.1396]
GTGACGCAACCGCAACAACCGGTAGCACAGTACTTTAAAGTGCAACCCGATGCGATTCAAGTAGCGGGCGATAGTGTCCA
ATTAACGGCAATCGGCCAACAAGATGGTCAGACTATTAAGGCTTATTATCGCTGCCAAACGTTCGCCGAGAAGCGGCGAT
GGCAGCAAGTACGACACCCCGTTTTGTTCTATGGGGAAAAAGATTTTAAACGTATACAGGGTGCTACCAATCAAAATGAG
TTTGATTATGCCCGTTTTTTAGCGCAACAGAAGCGCTGCTTTTACCAACTGACGTTAGCCAAAAAAACAACTTTTGCGCT
GAGACGCCCTAGTAGCGGTTTGGATTGGCTACATTATTGGCGCCAAACGTGCGCACTGTATTTACGTAAGTTACCAACAG
CACTACGGTTTCATGCGCAGACGTTACTATTAGGTTTGCGGGAAGCGCAAGTTGACCATTACCAGGTTGTTTTGGGCCAC
TTAGGGATTATTCATCTCTTAAGTCTATCAGGGTTGCACGTGTTTTATTTAGTGCAAGTCATTCGGTGGTGTGCGACTTA
TTGCCGCATACCGCGTGAGTGGTTAAACTGTATGTTATTTGGGCTATTGCCGGTATATGCCTTACTGGTTGGTGGTACGA
CAAGCATTAGTCGCGCGATTGCGCTTATTTTATCCCGGTTACTTTGCAAACAGTTGGGCATTCGGCAATCAAGGTTAGAT
AGTTGGAGTTTAGTATTACTGGTCAATTTATTCTGGCAGCCTTATTTGCTACATAGTATGGGCGGGATTTTAAGTTATTT
GATGGCCTTTGCGCTCATTTATATTGGTGAGGGTAGCACTTTTAAAGTTGCTTACTGGCTAAGTTTATTGAGTTTGCCGG
TTTGCTTACGCTTTAATTATCGCTGGCATGTGCTGACGATAATGATGAATGCCTTGGTAACGCCTATCTATCTGCCAATT
GTGCTAGGTTTGGTGATTGTAGCGAGTGTGATGTTACCTGTTAGCAATCTAGTGGTTAACGGATGTGAGTGGCTGTTACA
GTTGATTTACAAAGGCTTAGGACTAGTTGTTCAAATTCCCCATGCGATGATTACGTTTGGTAAAATACCATTATTACCGT
TACTATTGATTGTGACGGTCAGTCTCTTGTTAATCGATGGCCAGGCAATTAGTAATCAATGGCGTAAACGGCTGAAACGC
ACATTGGTAAGTTTGTATCTGGCTAGTTTTTTGGCGATTCATTTTAATCCGACTGGTCGGGTGGTCATGTTTGATATTGG
TCAAGGTGATAGTCTGTTGATTCAGACGCCGTTTAACCGGCATCAGCTTTTAATCGATACTGGTGGTCGCCTAGCGCTAC
CGCAAGCAGCTTGGCAACGGCGAGCGCAGGTTTCACGAGCGGAAAAAGTAACGGTTAATTATCTCTATAGCCAAGGAGTA
GATCACATTGATGCGGTGGCACTTTCTCATCAGGATGCCGATCATATTGGTGATTTGAACCAGATTTTAAAACAAATTCG
TGTTGATCGAATCATTTGTGCTGCCGGATTACCGCAAAATCGGCAATTTCAAAGACAAATTCGACCATTTTTAGCAACGG
TTCAGATAGAACCCTATTTAGCCGGGGCCGCTTTTAAAGTGGGATCACAAAAATTTAACGTCTTAGCACCGACTAAGCCG
GGAAAAGGCGAAAATAGTGATTCGTTAGTCTTACAGGCACAAATTGGTGGGGCTAGCTGGCTTTTTACAGGAGATCTAGA
ACAAGAAGGTGAACGGGCAATTATCGAGCGGTATCCACAATTAACCGTCGATTATTTAAAAGTTGGCCATCATGGTAGTA
AAACGGCTAGTGACCCCACCGTGATTAAAAAATTGCACTTAAAAGGCGCATTAATCTCAACCGGCAGAGAGAATCGTTAT
GGTCATCCGCACCAGGAAACTTTGACGACTTTGCAAGCGGCCAAAGTGCCTTATTGGCTAACGGCGCAGCAGGGGATGTT
GACCTGGGCGTACGGTCCCGGTCAAAGCGAAAAACTGCAGACAACAATAAAGGATAGTGAAAAATGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(142-385)

Metallo-beta-lactamase superfamily (Lactamase_B)

(427-635)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Latilactobacillus sakei subsp. sakei 23K

99.564

100

0.996

Multiple sequence alignment