Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   Gferi_RS06770 Genome accession   NZ_CP017269
Coordinates   1340650..1342527 (-) Length   625 a.a.
NCBI ID   WP_069974864.1    Uniprot ID   -
Organism   Geosporobacter ferrireducens strain IRF9     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1335650..1347527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Gferi_RS06750 (Gferi_06750) - 1335958..1336317 (+) 360 WP_069974860.1 BlaI/MecI/CopY family transcriptional regulator -
  Gferi_RS06755 (Gferi_06755) - 1336314..1338755 (+) 2442 WP_069974861.1 M56 family metallopeptidase -
  Gferi_RS06760 (Gferi_06760) - 1338958..1339611 (-) 654 WP_069974862.1 hypothetical protein -
  Gferi_RS06765 (Gferi_06765) - 1339715..1340488 (-) 774 WP_069974863.1 LuxR C-terminal-related transcriptional regulator -
  Gferi_RS06770 (Gferi_06770) rcrQ 1340650..1342527 (-) 1878 WP_069974864.1 ABC transporter ATP-binding protein Regulator
  Gferi_RS06775 (Gferi_06775) - 1342524..1344713 (-) 2190 WP_069974865.1 ABC transporter ATP-binding protein -
  Gferi_RS06780 (Gferi_06780) pgmB 1344897..1345541 (-) 645 WP_069974866.1 beta-phosphoglucomutase -

Sequence

Protein


Download         Length: 625 a.a.        Molecular weight: 69292.48 Da        Isoelectric Point: 8.2571

>NTDB_id=197120 Gferi_RS06770 WP_069974864.1 1340650..1342527(-) (rcrQ) [Geosporobacter ferrireducens strain IRF9]
MSDKRKENRKTAGPGGLGGGRMGGGSMGQVEKAKNFKGTMKELMKYIKPYNLSIMIVIIFALGSAGFSIVGPKILGKATT
RLFEGLMNKIMGVPGAAIDFDYIGSIIILLMGLYLASAMFTFIQGYIMAGVAQKVSFNLRKEISEKINRMPLNYFDKINH
GEVLSRVSNDVDTVSQTLNQSMSQIITAVTTIIGVLIMMLSISWQMTLAALLILPVSTGLIAGVVKKSQKYFKQQQEYLG
HVNGHVEEIYGGHIVMKAFNGEKDAIEEFEKLNDNLYDSAWKSQFLSGIMMPIMQFVGNLGYVIVSILGGWLAIKKTIEV
GDILAFIQYVRNFTQPISQVAQVSNVLQSTAAAAERVFEFLDEREEIAETSNPAQLDKVRGEVTFEHVHFGYNPDKIIIN
DFSAHIKSGQKVAIVGPTGAGKTTIVKLLMRFYDINRGAIRIDGHDIKDFTRGDLRNIFGMVLQDTWLFNGSIMDNIRYG
RLTASDEEVIEAAKLAHVHSFVKTLPNRYHMELNEEVSNISQGQKQLLTIARAILANPKILILDEATSSVDTRTEVLIQK
AMENLMKDRTSFIIAHRLSTIRDADLILVMKDGDIIEQGNHKELLAAKGFYASLYLSQFDIGDVS

Nucleotide


Download         Length: 1878 bp        

>NTDB_id=197120 Gferi_RS06770 WP_069974864.1 1340650..1342527(-) (rcrQ) [Geosporobacter ferrireducens strain IRF9]
ATGAGCGATAAAAGAAAAGAAAATAGAAAAACTGCTGGTCCAGGAGGGCTTGGCGGCGGACGCATGGGGGGCGGCTCCAT
GGGACAAGTCGAAAAAGCAAAAAATTTTAAAGGCACAATGAAGGAATTAATGAAATATATAAAACCTTATAACCTGTCTA
TTATGATTGTGATCATTTTTGCATTAGGAAGTGCAGGATTTTCAATTGTTGGGCCTAAGATATTGGGGAAAGCTACAACC
AGACTTTTTGAAGGGCTTATGAATAAAATCATGGGAGTTCCGGGAGCTGCCATTGACTTTGATTATATTGGCAGTATTAT
TATTCTGTTGATGGGATTATATTTAGCAAGTGCAATGTTTACATTTATACAGGGGTATATCATGGCAGGCGTGGCGCAAA
AAGTTTCATTCAATTTGAGGAAGGAAATCTCAGAAAAAATTAACCGCATGCCCCTCAATTATTTTGATAAAATCAATCAT
GGAGAGGTTTTATCAAGGGTTAGCAATGATGTGGATACCGTGAGCCAGACATTAAATCAAAGCATGTCGCAAATCATAAC
GGCAGTGACAACCATCATTGGCGTATTGATTATGATGTTATCTATAAGCTGGCAAATGACGTTGGCTGCACTCTTGATCC
TGCCTGTATCGACAGGATTGATAGCAGGGGTAGTGAAGAAATCACAAAAATATTTTAAACAGCAGCAAGAATATTTGGGA
CATGTGAATGGACATGTGGAAGAGATTTATGGCGGACATATTGTAATGAAAGCCTTTAATGGAGAAAAAGATGCTATTGA
GGAATTTGAAAAGCTTAATGATAATTTGTATGATTCTGCATGGAAGTCTCAATTTCTATCTGGAATCATGATGCCAATCA
TGCAGTTTGTCGGGAATCTTGGATATGTTATTGTATCCATCCTTGGCGGCTGGCTTGCTATAAAGAAAACAATTGAAGTT
GGAGATATTCTTGCTTTTATACAATATGTCAGAAACTTTACACAGCCAATATCCCAAGTAGCGCAAGTATCTAATGTGCT
TCAATCAACAGCGGCTGCCGCTGAAAGAGTTTTTGAATTTTTGGATGAACGGGAAGAAATTGCAGAAACATCAAATCCGG
CCCAGCTTGATAAGGTTAGGGGAGAAGTCACATTTGAGCATGTTCACTTTGGATACAATCCTGATAAGATTATCATCAAT
GATTTCTCAGCGCACATTAAGTCAGGCCAGAAGGTTGCTATTGTAGGCCCAACAGGTGCGGGGAAGACTACAATCGTGAA
GCTGTTAATGCGTTTTTATGATATCAATAGGGGTGCGATCCGGATAGATGGTCATGATATAAAAGATTTTACGCGAGGAG
ATTTACGGAACATATTTGGAATGGTCCTTCAAGATACTTGGCTGTTTAACGGTTCAATCATGGATAATATCCGCTATGGA
AGACTTACTGCCAGTGATGAGGAAGTGATTGAAGCTGCTAAGTTGGCCCATGTCCACAGTTTCGTAAAGACCTTACCCAA
TAGATATCATATGGAATTAAACGAAGAGGTCAGCAACATATCTCAAGGACAAAAGCAATTATTGACCATTGCCCGGGCAA
TTTTAGCCAATCCTAAAATACTAATACTGGATGAAGCTACCAGTTCCGTAGATACCCGTACAGAGGTTTTAATACAAAAA
GCCATGGAAAATCTGATGAAAGACAGAACCAGCTTTATCATCGCACACAGATTGTCAACCATAAGGGATGCGGATCTCAT
ATTGGTTATGAAAGACGGGGATATCATAGAGCAGGGTAATCATAAAGAATTATTAGCCGCCAAGGGGTTCTATGCATCAC
TTTATCTTAGTCAGTTTGATATTGGCGATGTCTCATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(400-548)

ABC transporter transmembrane region (ABC_membrane)

(55-336)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

52.137

93.6

0.488

Multiple sequence alignment