Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ABE28_RS06160 Genome accession   NZ_CP017080
Coordinates   1289943..1291760 (+) Length   605 a.a.
NCBI ID   WP_064466576.1    Uniprot ID   A0A1B3XL31
Organism   Peribacillus muralis strain G25-68     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1284943..1296760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABE28_RS06140 (ABE28_006140) spxA 1285327..1285722 (+) 396 WP_034314502.1 transcriptional regulator SpxA -
  ABE28_RS06145 (ABE28_006145) mecA 1286198..1286866 (+) 669 WP_064466579.1 adaptor protein MecA -
  ABE28_RS06150 (ABE28_006150) cls 1286942..1288450 (+) 1509 WP_064466578.1 cardiolipin synthase -
  ABE28_RS06155 (ABE28_006155) - 1288549..1289760 (+) 1212 WP_064466577.1 competence protein CoiA -
  ABE28_RS06160 (ABE28_006160) pepF 1289943..1291760 (+) 1818 WP_064466576.1 oligoendopeptidase F Regulator
  ABE28_RS06175 (ABE28_006175) - 1292586..1293479 (-) 894 WP_083231967.1 ClpXP adapter SpxH family protein -
  ABE28_RS06180 (ABE28_006180) - 1293476..1293880 (-) 405 WP_064466574.1 globin -
  ABE28_RS06185 (ABE28_006185) - 1294085..1294711 (-) 627 WP_064466573.1 lytic transglycosylase domain-containing protein -
  ABE28_RS06190 (ABE28_006190) - 1294771..1295349 (-) 579 WP_064466572.1 CYTH domain-containing protein -
  ABE28_RS06195 (ABE28_006195) - 1295651..1296271 (+) 621 WP_064466571.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69680.17 Da        Isoelectric Point: 4.7679

>NTDB_id=195271 ABE28_RS06160 WP_064466576.1 1289943..1291760(+) (pepF) [Peribacillus muralis strain G25-68]
MVQETKVNTLPERNEIAAEDTWRLEDIFATEEDWEAAFKAVKEDLKKADAHKGTLGESAEKLFSALQLQDEVFENLGKVY
SYSHMRNDQDTTNAFYQGKEDRAKALFAQAAAAFSYMVPELLSIDESKVAGFLEEKEELKLYKHSLEEISLQRPHILTAE
QEELLAQASEVLDASGNTFGMLNNADLKFPTIKDEEGNEVEITHGRYIRFLESEDRRVREEAFKGVYSKYGEFRNTFAST
LSGEVKNHNFNATVRKYDSARHAALSSNNIPETVYDNLVKTVNDNLPLLHRYLELRKRVLALDELHMYDLFTPLVKEVKM
EVTYAEAKDYVLKGLAPLGEDYLNVLKEGFENRWVDVHENKGKRSGAYSSGTYGTNPYILMNWQNNVNNLFTLVHEFGHS
VHSYYTRKCQPYPYGNYSIFVAEVASTCNENLLNDYLLNTIEDEKKRIYLLNHYLEGFRGTLFRQTMFAEFEHAIHLKAQ
NGEALTADMLTKEYYELNKKYFGENVTIDEEIGLEWARIPHFYYNYYVYQYATGISAATALSKQILEEGEPAVKRYLEFL
KSGSSDYPIEVLKKAGVDMTKAEPVQEAMNVFEEKLNELEELLNK

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=195271 ABE28_RS06160 WP_064466576.1 1289943..1291760(+) (pepF) [Peribacillus muralis strain G25-68]
ATGGTGCAGGAAACAAAAGTGAATACTTTACCGGAGAGAAACGAAATAGCAGCCGAGGATACTTGGAGACTTGAAGATAT
TTTCGCAACCGAGGAAGATTGGGAAGCCGCCTTTAAAGCGGTGAAAGAAGATCTCAAAAAAGCGGATGCACACAAAGGAA
CGCTTGGTGAGAGTGCGGAAAAGTTATTTTCAGCTCTTCAACTTCAAGATGAAGTATTTGAAAACCTAGGAAAAGTGTAT
TCATATTCACATATGCGCAATGATCAAGATACGACGAACGCTTTTTATCAAGGGAAGGAAGATCGGGCAAAAGCTTTATT
TGCTCAAGCAGCTGCCGCATTTTCTTATATGGTACCTGAACTTTTGAGTATTGATGAAAGCAAAGTGGCTGGATTTTTGG
AAGAAAAAGAAGAGCTGAAACTCTATAAACATTCCTTGGAGGAAATAAGTCTTCAAAGGCCCCATATCTTAACTGCTGAG
CAAGAAGAATTATTGGCACAGGCATCAGAGGTACTCGATGCATCAGGCAATACGTTCGGCATGCTTAACAATGCCGACTT
GAAATTCCCGACCATCAAGGATGAAGAAGGAAATGAAGTGGAGATCACTCACGGACGGTATATTCGTTTTCTTGAAAGTG
AAGACCGTCGTGTACGTGAGGAGGCGTTCAAAGGGGTATACAGCAAGTATGGAGAGTTCCGCAATACCTTTGCCTCCACC
TTGTCCGGAGAAGTGAAGAATCATAACTTCAATGCGACGGTTCGCAAATATGATTCAGCAAGACATGCGGCTTTAAGCAG
CAATAACATCCCGGAGACGGTATACGATAACCTTGTCAAAACGGTTAATGACAATCTGCCTTTGCTGCACCGTTACCTTG
AATTGCGTAAGAGGGTACTCGCTTTGGATGAACTTCATATGTATGATTTATTCACTCCGCTCGTAAAAGAAGTGAAGATG
GAAGTGACATATGCTGAGGCAAAAGATTATGTCCTTAAGGGTCTTGCCCCGCTTGGCGAGGACTATTTAAATGTGTTGAA
AGAAGGATTTGAAAATCGCTGGGTCGATGTACATGAAAATAAGGGGAAACGAAGCGGCGCCTATTCCTCCGGTACATATG
GCACGAATCCATACATTTTAATGAACTGGCAAAATAACGTCAATAACCTATTCACGCTCGTTCATGAGTTTGGGCATTCG
GTCCATAGCTACTATACACGCAAATGTCAGCCATATCCATATGGAAACTACTCGATATTTGTTGCTGAGGTCGCCTCGAC
TTGTAATGAAAACTTATTGAATGATTATTTATTGAATACAATCGAAGATGAAAAAAAGCGTATTTATTTATTGAATCATT
ACCTGGAAGGCTTCCGTGGAACATTATTCCGCCAAACGATGTTTGCAGAGTTTGAACATGCAATCCATCTAAAGGCGCAA
AATGGGGAAGCGCTGACAGCCGATATGCTCACGAAGGAATATTATGAGCTGAATAAGAAATACTTTGGCGAGAATGTGAC
CATAGATGAGGAAATCGGGTTGGAATGGGCACGGATACCACATTTCTACTACAATTATTATGTTTATCAATATGCGACAG
GAATCAGTGCAGCTACAGCTTTGAGCAAGCAAATTCTCGAAGAAGGCGAACCTGCAGTCAAAAGATATTTGGAATTCTTG
AAATCGGGAAGTTCCGATTATCCAATCGAAGTACTCAAAAAGGCTGGGGTCGATATGACAAAAGCCGAGCCTGTCCAAGA
AGCCATGAATGTATTCGAAGAGAAGTTAAATGAATTGGAAGAGCTATTGAATAAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(211-590)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B3XL31

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.59

98.017

0.496

Multiple sequence alignment