Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   S101267_RS08435 Genome accession   NZ_CP021505
Coordinates   1570715..1571164 (+) Length   149 a.a.
NCBI ID   WP_013352152.1    Uniprot ID   A0A9P1NHL6
Organism   Bacillus amyloliquefaciens strain SRCM101267     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1565715..1576164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101267_RS08395 (S101267_01682) ctaE 1565838..1566461 (+) 624 WP_013352146.1 cytochrome c oxidase subunit III -
  S101267_RS08400 (S101267_01683) ctaF 1566464..1566796 (+) 333 WP_088030503.1 cytochrome c oxidase subunit IVB -
  S101267_RS08405 (S101267_01684) ctaG 1566821..1567705 (+) 885 WP_014471807.1 cytochrome c oxidase assembly factor CtaG -
  S101267_RS08410 (S101267_01685) - 1567738..1568097 (-) 360 WP_013352148.1 YugN family protein -
  S101267_RS08415 (S101267_01686) - 1568238..1568681 (+) 444 WP_013352149.1 CBS domain-containing protein -
  S101267_RS08420 (S101267_01687) - 1568766..1569806 (+) 1041 WP_013352150.1 CAP domain-containing protein -
  S101267_RS08425 (S101267_01688) - 1569978..1570388 (+) 411 WP_013352151.1 YlbD family protein -
  S101267_RS08430 (S101267_01689) - 1570404..1570643 (+) 240 WP_003154475.1 YlbE-like family protein -
  S101267_RS08435 (S101267_01690) ylbF 1570715..1571164 (+) 450 WP_013352152.1 YlbF family regulator Regulator
  S101267_RS08440 (S101267_01691) - 1571223..1571495 (+) 273 WP_013352153.1 YlbG family protein -
  S101267_RS08445 (S101267_01692) rsmD 1571794..1572348 (+) 555 WP_007409693.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  S101267_RS08450 (S101267_01693) coaD 1572353..1572835 (+) 483 WP_013352154.1 pantetheine-phosphate adenylyltransferase -
  S101267_RS08455 (S101267_01694) ylbJ 1572853..1574079 (-) 1227 WP_014472570.1 sporulation integral membrane protein YlbJ -
  S101267_RS08460 (S101267_01695) - 1574257..1575036 (+) 780 WP_013352156.1 patatin-like phospholipase family protein -
  S101267_RS08465 (S101267_01696) sepM 1575042..1576064 (+) 1023 WP_013352157.1 SepM family pheromone-processing serine protease Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16885.96 Da        Isoelectric Point: 4.9442

>NTDB_id=193498 S101267_RS08435 WP_013352152.1 1570715..1571164(+) (ylbF) [Bacillus amyloliquefaciens strain SRCM101267]
MYATVESVRLQSEAEQLAGMILQSETAENYRDCYKRLHEDEEARRIIRSFMSIKEQYEDVQRFGKYHPDYREISRKMREM
KRELDLNDKVAEFKKAETELQSLLDEISIELGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGGCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=193498 S101267_RS08435 WP_013352152.1 1570715..1571164(+) (ylbF) [Bacillus amyloliquefaciens strain SRCM101267]
ATGTATGCAACAGTTGAGTCCGTCAGGCTTCAAAGTGAAGCGGAGCAGCTTGCCGGCATGATTCTGCAGTCTGAGACGGC
TGAAAATTACCGCGATTGTTACAAGCGTCTCCATGAAGATGAAGAGGCACGGCGGATTATTCGTTCTTTTATGAGCATTA
AAGAGCAGTATGAGGATGTGCAGCGCTTTGGCAAATATCATCCTGACTATAGAGAGATTTCCCGCAAAATGAGAGAAATG
AAGCGGGAGCTGGATTTAAATGATAAGGTGGCCGAATTTAAAAAAGCGGAGACTGAGCTTCAGTCGCTGCTTGACGAGAT
CAGCATTGAACTCGGAACGGCCGTCTCGGAGCATGTAAAAGTTCCGACGGGGAATCCTTATTTTGACGGCCTGTCATCCT
GCGGCGGCGGCTGCGGTTCCGGCGGCGGGTGCGGATGCAAAGTTTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1NHL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

88.591

100

0.886