Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   BEN15_RS00840 Genome accession   NZ_CP016877
Coordinates   170203..170898 (-) Length   231 a.a.
NCBI ID   WP_065972493.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain KLDS 3.1003     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 165203..175898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEN15_RS00825 (BEN15_00830) - 166014..166559 (-) 546 WP_014608611.1 GNAT family N-acetyltransferase -
  BEN15_RS00830 (BEN15_00835) - 166625..167887 (-) 1263 WP_022096991.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  BEN15_RS00835 (BEN15_00840) - 167973..170213 (-) 2241 WP_065972492.1 DNA internalization-related competence protein ComEC/Rec2 -
  BEN15_RS00840 (BEN15_00845) comEA 170203..170898 (-) 696 WP_065972493.1 helix-hairpin-helix domain-containing protein Machinery gene
  BEN15_RS00845 (BEN15_00850) - 171007..171762 (-) 756 WP_065972494.1 lysophospholipid acyltransferase family protein -
  BEN15_RS00850 (BEN15_00855) - 171854..172828 (+) 975 WP_082308112.1 polysaccharide deacetylase family protein -
  BEN15_RS00855 (BEN15_00860) - 172878..173642 (+) 765 WP_065972495.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  BEN15_RS00860 (BEN15_00865) - 173646..173915 (+) 270 WP_065972496.1 GIY-YIG nuclease family protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 24517.46 Da        Isoelectric Point: 4.6300

>NTDB_id=193279 BEN15_RS00840 WP_065972493.1 170203..170898(-) (comEA) [Streptococcus thermophilus strain KLDS 3.1003]
MKEKILTYVKDNRLFVSVIAVLMVIFCFFLWMTCGAGSSMEAETSYTDVTALSTSSSKQSSQSLSEASSQSKTEGSEKVK
SKVTVDVKGAVVNPGVYTLKAGARVTDVIQEAGGMTEDADAKSVNLAASLSDEEVIYVANKDENVSVLDQTGTGQVSDKG
GQAVSKDGKINLNTATSEQLQTISGIGAKRTEDIIAYRESHGGFQSVDDLKNVSGIGDKTLDKIRESLYVA

Nucleotide


Download         Length: 696 bp        

>NTDB_id=193279 BEN15_RS00840 WP_065972493.1 170203..170898(-) (comEA) [Streptococcus thermophilus strain KLDS 3.1003]
GTGAAGGAAAAGATTCTAACCTATGTCAAAGATAATCGTCTGTTTGTGAGTGTCATCGCTGTACTGATGGTGATTTTTTG
CTTCTTTTTATGGATGACTTGTGGTGCCGGCAGCAGCATGGAGGCGGAGACGTCTTATACAGATGTGACAGCTTTGTCAA
CGTCTTCATCCAAACAAAGTTCACAGTCTCTTTCTGAGGCGTCTTCCCAGTCAAAGACCGAAGGAAGTGAAAAAGTTAAG
TCAAAAGTAACGGTAGATGTTAAGGGGGCTGTGGTCAATCCAGGTGTCTATACGCTAAAGGCAGGCGCTAGGGTGACAGA
TGTCATTCAAGAAGCTGGAGGAATGACAGAAGATGCAGACGCTAAGAGTGTTAACTTAGCCGCAAGCTTGTCAGATGAAG
AGGTTATTTATGTAGCCAATAAAGATGAAAATGTTTCTGTCCTTGATCAAACAGGTACTGGTCAGGTCTCTGATAAAGGA
GGGCAGGCTGTATCTAAGGATGGCAAAATTAACTTAAATACAGCAACCTCAGAGCAGTTGCAAACCATTTCTGGAATTGG
AGCTAAGCGGACAGAGGATATCATTGCCTATCGTGAAAGTCATGGCGGCTTTCAGTCCGTAGATGACTTGAAAAATGTCT
CAGGAATTGGTGATAAAACATTAGATAAAATCAGAGAGTCCCTCTATGTGGCTTAA

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(85-138)

Helix-hairpin-helix motif (HHH_3)

(167-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Streptococcus thermophilus LMD-9

98.268

100

0.983
  comEA/celA/cilE Streptococcus mitis SK321

39.912

98.701

0.394
  comEA/celA/cilE Streptococcus pneumoniae D39

39.035

98.701

0.385
  comEA/celA/cilE Streptococcus pneumoniae R6

39.035

98.701

0.385
  comEA/celA/cilE Streptococcus pneumoniae Rx1

39.035

98.701

0.385
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

39.035

98.701

0.385
  comEA/celA/cilE Streptococcus mitis NCTC 12261

37.719

98.701

0.372

Multiple sequence alignment