Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   CCL28_RS01925 Genome accession   NZ_CP021454
Coordinates   396318..396950 (-) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain H105     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 391318..401950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCL28_RS01900 (CCL28_01900) yhfG 391450..391617 (+) 168 WP_000736858.1 YhfG family protein -
  CCL28_RS01905 (CCL28_01905) fic 391607..392209 (+) 603 WP_001280613.1 putative adenosine monophosphate-protein transferase Fic -
  CCL28_RS01910 (CCL28_01910) pabA 392241..392804 (+) 564 WP_000601853.1 aminodeoxychorismate synthase component 2 -
  CCL28_RS01915 (CCL28_01915) argD 392890..394110 (+) 1221 WP_000963794.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  CCL28_RS01920 (CCL28_01920) yhfK 394177..396267 (-) 2091 WP_001296470.1 YccS/YhfK family putative transporter -
  CCL28_RS01925 (CCL28_01925) crp 396318..396950 (-) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  CCL28_RS01935 (CCL28_01935) yhfA 397252..397656 (+) 405 WP_001148908.1 OsmC family protein -
  CCL28_RS01940 (CCL28_01940) prkB 397711..398580 (-) 870 WP_001274684.1 phosphoribulokinase -
  CCL28_RS01945 (CCL28_01945) yheU 398634..398852 (-) 219 WP_000907085.1 YheU family protein -
  CCL28_RS01950 (CCL28_01950) yheT 398846..399868 (-) 1023 WP_000057364.1 hydrolase -
  CCL28_RS01955 (CCL28_01955) yheS 399868..401781 (-) 1914 WP_000634830.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=193067 CCL28_RS01925 WP_000242755.1 396318..396950(-) (crp) [Escherichia coli strain H105]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=193067 CCL28_RS01925 WP_000242755.1 396318..396950(-) (crp) [Escherichia coli strain H105]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAATCTGGCAAAACAACCGGATGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATCGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment