Detailed information    

insolico Bioinformatically predicted

Overview

Name   rocC   Type   Regulator
Locus tag   CA921_RS00680 Genome accession   NZ_CP021283
Coordinates   147970..148662 (+) Length   230 a.a.
NCBI ID   WP_027266211.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila strain Allentown     
Function   rocR chaperone; repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 142970..153662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA921_RS00660 - 143588..143764 (-) 177 WP_106229713.1 dodecin domain-containing protein -
  CA921_RS00665 - 143942..146410 (+) 2469 WP_027266208.1 hypothetical protein -
  CA921_RS00670 dapB 146513..147244 (-) 732 WP_027266209.1 4-hydroxy-tetrahydrodipicolinate reductase -
  CA921_RS00675 - 147428..147613 (-) 186 WP_027266210.1 hypothetical protein -
  CA921_RS00680 rocC 147970..148662 (+) 693 WP_027266211.1 ProQ/FINO family protein Regulator
  CA921_RS00685 - 148663..149733 (+) 1071 WP_027266212.1 hypothetical protein -

Sequence

Protein


Download         Length: 230 a.a.        Molecular weight: 25775.71 Da        Isoelectric Point: 10.7292

>NTDB_id=192265 CA921_RS00680 WP_027266211.1 147970..148662(+) (rocC) [Legionella pneumophila subsp. pneumophila strain Allentown]
MRKQALHPRTAVINKAQKNQSRRARSDALLWLAANFPEAFDNSLRIRPLKIGIMSDILQHAEKAEQVGISKSKLREAVVL
FTRRLDYLACLKAREVRIDLLGNPVAEVTEEEAEHASMKIKKRVEKSVKNARKQVNAKAANHSHVNSQPSTVSSVKPMNS
FDSHPEPLLPIYPLRSSTYASQNVAMQSAKSPSVVVKHKAPKQYDPDAVARLKEKLGLSRKAEEKKETTE

Nucleotide


Download         Length: 693 bp        

>NTDB_id=192265 CA921_RS00680 WP_027266211.1 147970..148662(+) (rocC) [Legionella pneumophila subsp. pneumophila strain Allentown]
ATGAGAAAGCAGGCGCTGCACCCACGAACCGCTGTCATCAATAAAGCACAAAAAAATCAATCCAGGCGAGCGCGATCTGA
CGCATTATTATGGCTTGCGGCTAATTTCCCTGAGGCATTCGATAATTCTTTGCGTATTCGCCCATTAAAGATTGGTATTA
TGTCTGATATATTGCAGCATGCAGAAAAAGCAGAGCAAGTTGGAATTTCTAAAAGTAAATTAAGGGAAGCTGTTGTTCTT
TTTACCCGTCGTCTTGATTATCTGGCTTGCCTGAAAGCTCGTGAAGTCCGTATCGATTTGCTCGGAAATCCAGTAGCCGA
GGTTACTGAGGAAGAAGCTGAGCATGCTTCCATGAAAATTAAAAAACGCGTGGAAAAGAGTGTTAAAAATGCTCGCAAAC
AAGTGAATGCAAAAGCGGCTAATCATTCGCATGTAAATAGCCAACCAAGTACAGTTTCCAGCGTTAAGCCAATGAATTCG
TTTGATTCTCATCCTGAGCCTCTTTTGCCAATATATCCTCTCAGAAGCTCTACCTATGCCTCACAAAATGTGGCAATGCA
ATCCGCCAAGTCACCATCCGTAGTAGTCAAACATAAAGCACCAAAGCAATATGATCCGGATGCCGTAGCCCGTTTAAAAG
AAAAATTAGGATTGTCTCGAAAAGCGGAAGAGAAAAAGGAAACAACAGAGTAA

Domains

Predicted by InterProScan.

ProQ/FINO family (ProQ)

(26-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rocC Legionella pneumophila str. Paris

96.957

100

0.97