Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   B9L64_RS01480 Genome accession   NZ_CP020915
Coordinates   290973..291404 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain 50-1     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 285973..296404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9L64_RS01460 spoVS 286534..286794 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  B9L64_RS01465 tdh 287060..288103 (+) 1044 WP_029726482.1 L-threonine 3-dehydrogenase -
  B9L64_RS01470 kbl 288116..289294 (+) 1179 WP_014664025.1 glycine C-acetyltransferase -
  B9L64_RS01475 miaB 289442..290971 (+) 1530 WP_014479820.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  B9L64_RS01480 ymcA 290973..291404 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  B9L64_RS01485 cotE 291666..292211 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  B9L64_RS01490 hexA 292344..294920 (+) 2577 WP_029726481.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=189748 B9L64_RS01480 WP_003231834.1 290973..291404(+) (ymcA) [Bacillus subtilis strain 50-1]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=189748 B9L64_RS01480 WP_003231834.1 290973..291404(+) (ymcA) [Bacillus subtilis strain 50-1]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1