Detailed information NTG0186912

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: BBB50_RS01160
• Genome accession: NZ_CP016324
• Coordinates: 237531..238538 (+)
• Length: 335 a.a.
• NCBI ID: WP_000224452.1
• Uniprot ID: A0A085RG68
• Organism: Vibrio cholerae 2740-80
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 232531..243538

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BBB50_RS01140 (BBB50_01140)	metJ	232535..232852 (+)	318	WP_000796267.1	met regulon transcriptional regulator MetJ	-
BBB50_RS01145 (BBB50_01145)	-	232963..234240 (-)	1278	WP_001278588.1	malic enzyme-like NAD(P)-binding protein	-
BBB50_RS01150 (BBB50_01150)	rpmE	234548..234766 (-)	219	WP_000643446.1	50S ribosomal protein L31	-
BBB50_RS01155 (BBB50_01155)	priA	235021..237225 (+)	2205	WP_001247858.1	primosomal protein N'	-
BBB50_RS01160 (BBB50_01160)	cytR	237531..238538 (+)	1008	WP_000224452.1	DNA-binding transcriptional regulator CytR	Regulator
BBB50_RS01165 (BBB50_01165)	-	238710..239261 (+)	552	WP_001884022.1	SPOR domain-containing protein	-
BBB50_RS01170 (BBB50_01170)	hslV	239398..239955 (+)	558	WP_000208249.1	ATP-dependent protease subunit HslV	-
BBB50_RS01175 (BBB50_01175)	hslU	240021..241352 (+)	1332	WP_001293366.1	HslU--HslV peptidase ATPase subunit	-
BBB50_RS01180 (BBB50_01180)	-	241456..242373 (+)	918	WP_001066162.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
BBB50_RS01185 (BBB50_01185)	rraA	242448..242963 (+)	516	WP_000456236.1	ribonuclease E activity regulator RraA	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37018.59 Da
• Isoelectric Point: 7.0759

>NTDB_id=186912 BBB50_RS01160 WP_000224452.1 237531..238538(+) (cytR) [Vibrio cholerae 2740-80]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPSKK

Nucleotide

• Length: 1008 bp

>NTDB_id=186912 BBB50_RS01160 WP_000224452.1 237531..238538(+) (cytR) [Vibrio cholerae 2740-80]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGAGTTTCAACCGCGACCGTGTCTCGTGCGTTGATGAATCCAGAGAA
AGTCTCGTCGTCCACTCGTAAACGAGTGGAAGAGGCCGTGCTGGAAGCGGGTTACTCACCCAATTCTTTGGCGCGCAATT
TGCGCCGTAATGAATCGAAAACCATCGTTGCTATCGTGCCAGATATCTGTGATCCCTACTTTTCTGAGATCATTCGCGGT
ATTGAAGATGCCGCGATGGAGCACGGTTATCTGGTGCTGTTGGGGGATAGTGGTCAACAGAAGCGTCGGGAGAACTCGTT
CGTTAATCTGGTGTTTACCAAACAGGCAGACGGTATGTTGCTGCTGGGGACAGATTTGCCGTTTGATGTGAGTAAACCTG
AGCAGAAAAACCTACCGCCTATGGTGATGGCGTGTGAATTTGCGCCAGAGCTGGAATTGCCAACGGTACACATTGATAAC
CTGACCTCGGCATTTGAGGCGGTAAACTATCTCACTCAGCTTGGGCACAAACGGATTGCGCAGATCTCAGGTCCACAACA
TGCTGCGCTGTGCCAATTCCGTCATCAAGGCTATCAACAGGCGTTGCGTCGTGCTGGCATCACCATGAACCCGACTTACT
GCACTTTTGGCGATTTCACTTTTGAAGCCGGGGCAAAAGCGGTGCGTCAGCTGTTGGCATTGCCTGAGCAGCCGACCGCG
ATTTTCTGTCATAACGATACGATGGCGATTGGCGCAATTCAGGAAGCGAAGCGACTTGGCTTGCGCGTACCGCAAGATCT
CTCTGTGGTCGGTTTTGACGATATTCAGTTTGCCCAGTACTGCGATCCCCCATTAACCACCATTTCGCAGCCGCGTTATG
AGATTGGCCGTCAAGCCATGCTGATGATGCTTGAGCTGCTTCGCGGACACGATGTACGTGCTGGATCGCGTCTTTTGGAG
ACCAAGCTGGTCGTGCGTGAGAGTGCTGCGCCGCCAAGCAAGAAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A085RG68

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	100	100	1
cytR	Vibrio parahaemolyticus RIMD 2210633	90.719	99.701	0.904