Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   A9I66_RS13555 Genome accession   NZ_CP016072
Coordinates   2807859..2808365 (-) Length   168 a.a.
NCBI ID   WP_014614920.1    Uniprot ID   A0A161W350
Organism   Staphylococcus pseudintermedius strain NA45 isolate UWMNA45     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2802859..2813365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9I66_RS14845 - 2803777..2803908 (-) 132 WP_015728521.1 hypothetical protein -
  A9I66_RS13540 (A9I66_13535) - 2804077..2806068 (+) 1992 WP_014614918.1 catalase -
  A9I66_RS14800 - 2806282..2806656 (-) 375 WP_157980673.1 Abi family protein -
  A9I66_RS13545 (A9I66_13540) - 2806653..2807372 (-) 720 WP_015728519.1 Abi family protein -
  A9I66_RS13550 (A9I66_13545) rpsR 2807563..2807805 (-) 243 WP_014614919.1 30S ribosomal protein S18 -
  A9I66_RS13555 (A9I66_13550) ssbA 2807859..2808365 (-) 507 WP_014614920.1 single-stranded DNA-binding protein Machinery gene
  A9I66_RS13560 (A9I66_13555) rpsF 2808388..2808684 (-) 297 WP_014614921.1 30S ribosomal protein S6 -
  A9I66_RS13565 (A9I66_13560) sbi 2809021..2810517 (+) 1497 WP_065354653.1 Ig-binding surface protein Sbi/SpsK -
  A9I66_RS13570 (A9I66_13565) - 2810571..2811380 (-) 810 WP_065354654.1 ABC transporter permease subunit -
  A9I66_RS13575 (A9I66_13570) - 2811373..2812308 (-) 936 WP_065354655.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18738.42 Da        Isoelectric Point: 5.1957

>NTDB_id=185650 A9I66_RS13555 WP_014614920.1 2807859..2808365(-) (ssbA) [Staphylococcus pseudintermedius strain NA45 isolate UWMNA45]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVNNFLFKGSLAGVDGRLQSR
SYENQEGRRVFVTEVVCDSVQFLEPKSQNQRHANQNQGNQFDSYGQGFGGQQQGQNSSYQNNHQQPANDNPFANANGPID
ISDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=185650 A9I66_RS13555 WP_014614920.1 2807859..2808365(-) (ssbA) [Staphylococcus pseudintermedius strain NA45 isolate UWMNA45]
ATGCTTAATAGAGTCGTATTAGTAGGTCGCTTAACTAAAGATCCAGAATACAGAACGACACCCTCAGGCGTAAGTGTAGC
GACATTTACCTTAGCGGTTAATCGTACATTTACGAATGCGCAAGGGGAACGTGAAGCAGACTTCATTAACTGCGTTGTTT
TCCGTAAACAAGCAGAAAATGTAAACAACTTTTTGTTTAAAGGAAGTCTCGCTGGCGTTGACGGTCGCTTACAATCACGC
AGTTACGAAAACCAAGAAGGCCGACGTGTATTCGTCACTGAAGTGGTATGTGATAGTGTTCAATTCCTTGAGCCAAAATC
ACAAAACCAACGTCACGCGAATCAAAACCAAGGCAATCAATTCGATAGCTACGGTCAAGGATTCGGTGGACAACAACAAG
GCCAAAATTCGTCTTATCAAAACAATCATCAGCAACCAGCTAACGATAATCCATTTGCGAATGCGAACGGTCCTATCGAT
ATTAGCGATGATGATTTACCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.773

100

0.679
  ssb Latilactobacillus sakei subsp. sakei 23K

56.14

100

0.571
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.182

65.476

0.381

Multiple sequence alignment