Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   A6J54_RS04095 Genome accession   NZ_CP020402
Coordinates   680348..680854 (-) Length   168 a.a.
NCBI ID   WP_002242008.1    Uniprot ID   -
Organism   Neisseria meningitidis strain FDAARGOS_215     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 675348..685854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J54_RS04080 (A6J54_03925) - 675752..676474 (-) 723 WP_002218110.1 Fic family protein -
  A6J54_RS04090 (A6J54_03935) polA 677410..680202 (-) 2793 WP_080541979.1 DNA polymerase I -
  A6J54_RS04095 (A6J54_03940) luxS 680348..680854 (-) 507 WP_002242008.1 S-ribosylhomocysteine lyase Regulator
  A6J54_RS04100 (A6J54_03945) - 680876..681295 (-) 420 WP_002225853.1 DUF2251 domain-containing protein -
  A6J54_RS04105 (A6J54_03950) - 681321..682337 (-) 1017 WP_002225852.1 YeiH family protein -
  A6J54_RS04110 (A6J54_03955) cyaY 682364..682687 (-) 324 WP_002223115.1 iron donor protein CyaY -
  A6J54_RS04115 (A6J54_03960) lptM 682758..682928 (+) 171 WP_002246479.1 LPS translocon maturation chaperone LptM -
  A6J54_RS04120 (A6J54_03965) lysA 682939..684183 (+) 1245 WP_080541980.1 diaminopimelate decarboxylase -
  A6J54_RS04125 (A6J54_03970) - 684219..684311 (-) 93 WP_002233157.1 methionine/alanine import family NSS transporter small subunit -
  A6J54_RS04130 (A6J54_03975) - 684308..685843 (-) 1536 WP_002221654.1 sodium-dependent transporter -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18668.44 Da        Isoelectric Point: 5.5451

>NTDB_id=185599 A6J54_RS04095 WP_002242008.1 680348..680854(-) (luxS) [Neisseria meningitidis strain FDAARGOS_215]
MPLLDSFKVDHTRMHAPAVRVAKTMTTPKGDTITVFDLRFCVPNKEILPEKGIHTLEHLFAGFMRDHLNGNGVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMQDVANVKDQSKIPELNEYQCGTYLMHSLAEAQQIAQNVLARKVAVNKNEELT
LDEGLLNA

Nucleotide


Download         Length: 507 bp        

>NTDB_id=185599 A6J54_RS04095 WP_002242008.1 680348..680854(-) (luxS) [Neisseria meningitidis strain FDAARGOS_215]
ATGCCCCTGTTAGACAGTTTCAAAGTCGATCACACCCGTATGCATGCCCCCGCCGTACGCGTGGCGAAAACCATGACCAC
GCCCAAAGGCGACACCATTACCGTGTTCGACCTGCGCTTTTGCGTTCCCAACAAAGAAATCCTGCCCGAAAAAGGCATAC
ACACGCTGGAGCATTTGTTCGCAGGTTTTATGCGCGACCACTTGAACGGCAACGGCGTCGAAATCATCGACATTTCCCCG
ATGGGCTGCCGCACCGGTTTCTACATGAGCCTCATCGGTACGCCTTCCGAACAGCAGGTCGCCGATGCGTGGCTGGCTTC
GATGCAGGATGTGGCCAATGTCAAAGACCAAAGCAAAATCCCCGAGTTGAACGAATACCAATGCGGTACTTACCTGATGC
ACTCGCTTGCCGAAGCGCAACAAATCGCGCAAAACGTGTTGGCGCGCAAAGTGGCGGTGAACAAAAATGAAGAGCTGACG
CTGGATGAAGGGCTGCTGAACGCCTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

76.647

99.405

0.762