Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   BSK2_RS09090 Genome accession   NZ_CP020367
Coordinates   1751790..1752221 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain GQJK2     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1746790..1757221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSK2_RS09070 (BSK2_09070) spoVS 1747351..1747611 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  BSK2_RS09075 (BSK2_09075) tdh 1747877..1748920 (+) 1044 WP_015252072.1 L-threonine 3-dehydrogenase -
  BSK2_RS09080 (BSK2_09080) kbl 1748933..1750111 (+) 1179 WP_080529328.1 glycine C-acetyltransferase -
  BSK2_RS09085 (BSK2_09085) miaB 1750259..1751788 (+) 1530 WP_014664026.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  BSK2_RS09090 (BSK2_09090) ymcA 1751790..1752221 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  BSK2_RS09095 (BSK2_09095) cotE 1752475..1753020 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  BSK2_RS09100 (BSK2_09100) hexA 1753153..1755729 (+) 2577 WP_076457703.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=185352 BSK2_RS09090 WP_003231834.1 1751790..1752221(+) (ymcA) [Bacillus subtilis strain GQJK2]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=185352 BSK2_RS09090 WP_003231834.1 1751790..1752221(+) (ymcA) [Bacillus subtilis strain GQJK2]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCTCGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAAATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment