Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | LLUC06_RS12415 | Genome accession | NZ_CP015902 |
| Coordinates | 2485892..2486392 (-) | Length | 166 a.a. |
| NCBI ID | WP_003131953.1 | Uniprot ID | - |
| Organism | Lactococcus lactis subsp. lactis strain UC06 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2480892..2491392
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LLUC06_RS12390 (LLUC06_2403) | gnd | 2481962..2482867 (-) | 906 | WP_032946987.1 | phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) | - |
| LLUC06_RS12395 (LLUC06_2404) | - | 2483232..2484080 (+) | 849 | WP_021723114.1 | MurR/RpiR family transcriptional regulator | - |
| LLUC06_RS12400 (LLUC06_2405) | - | 2484118..2484426 (+) | 309 | WP_017865196.1 | DUF960 domain-containing protein | - |
| LLUC06_RS12405 (LLUC06_2406) | - | 2484500..2485273 (-) | 774 | WP_003131951.1 | metallophosphoesterase | - |
| LLUC06_RS12410 (LLUC06_2407) | rpsR | 2485473..2485718 (-) | 246 | WP_003131952.1 | 30S ribosomal protein S18 | - |
| LLUC06_RS12415 (LLUC06_2408) | ssb | 2485892..2486392 (-) | 501 | WP_003131953.1 | single-stranded DNA-binding protein | Machinery gene |
| LLUC06_RS12420 (LLUC06_2409) | rpsF | 2486422..2486715 (-) | 294 | WP_003131954.1 | 30S ribosomal protein S6 | - |
| LLUC06_RS12425 (LLUC06_2410) | - | 2486907..2487761 (-) | 855 | WP_012898664.1 | undecaprenyl-diphosphate phosphatase | - |
| LLUC06_RS12430 (LLUC06_2411) | - | 2488284..2489750 (+) | 1467 | WP_162299551.1 | amino acid permease | - |
Sequence
Protein
Download Length: 166 a.a. Molecular weight: 18304.13 Da Isoelectric Point: 5.2279
>NTDB_id=183103 LLUC06_RS12415 WP_003131953.1 2485892..2486392(-) (ssb) [Lactococcus lactis subsp. lactis strain UC06]
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSAREGMGGGTSAGSYSAPSQSTNNTPRPQTNNNNATPNFGRDADPFGSSPMEIS
DDDLPF
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSAREGMGGGTSAGSYSAPSQSTNNTPRPQTNNNNATPNFGRDADPFGSSPMEIS
DDDLPF
Nucleotide
Download Length: 501 bp
>NTDB_id=183103 LLUC06_RS12415 WP_003131953.1 2485892..2486392(-) (ssb) [Lactococcus lactis subsp. lactis strain UC06]
ATGATTAACAATGTTGTATTAGTAGGACGCATTACTCGCGATCCTGAACTTCGATACACCCCTCAAAATCAAGCTGTCGC
AACATTTTCATTGGCTGTAAACCGTCAATTTAAAAATGCGAATGGCGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAGAATTTGGCGAATTGGGCTAAAAAAGGAGCTTTGATTGGGGTAACTGGTCGAATTCAAACACGT
AACTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGACAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGTGAAGGTATGGGAGGCGGAACTTCTGCTGGTTCATATTCTGCACCTAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAACAATAATGCAACACCGAATTTCGGTCGTGATGCTGATCCGTTTGGTAGCTCACCGATGGAAATTTCG
GATGATGACCTTCCATTCTAA
ATGATTAACAATGTTGTATTAGTAGGACGCATTACTCGCGATCCTGAACTTCGATACACCCCTCAAAATCAAGCTGTCGC
AACATTTTCATTGGCTGTAAACCGTCAATTTAAAAATGCGAATGGCGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAGAATTTGGCGAATTGGGCTAAAAAAGGAGCTTTGATTGGGGTAACTGGTCGAATTCAAACACGT
AACTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGACAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGTGAAGGTATGGGAGGCGGAACTTCTGCTGGTTCATATTCTGCACCTAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAACAATAATGCAACACCGAATTTCGGTCGTGATGCTGATCCGTTTGGTAGCTCACCGATGGAAATTTCG
GATGATGACCTTCCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
60.465 |
100 |
0.627 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
57.803 |
100 |
0.602 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.855 |
0.373 |
| ssb | Glaesserella parasuis strain SC1401 |
35.028 |
100 |
0.373 |