Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BV121_RS05395 Genome accession   NZ_CP020008
Coordinates   1064196..1064861 (-) Length   221 a.a.
NCBI ID   WP_013526173.1    Uniprot ID   Q4QLV5
Organism   Haemophilus influenzae strain 5P28H1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1059196..1069861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV121_RS05365 (BV121_1088) ddc 1059520..1061055 (-) 1536 WP_011272306.1 L-2,4-diaminobutyrate decarboxylase -
  BV121_RS05370 (BV121_1089) vapC 1061075..1061473 (-) 399 WP_005651560.1 type II toxin-antitoxin system tRNA(fMet)-specific endonuclease VapC -
  BV121_RS05375 (BV121_1090) vapB2 1061473..1061706 (-) 234 WP_005648011.1 type II toxin-antitoxin system antitoxin VapB2 -
  BV121_RS05380 (BV121_1091) - 1061853..1063217 (-) 1365 WP_005651563.1 diaminobutyrate--2-oxoglutarate transaminase -
  BV121_RS05385 (BV121_1092) rpmG 1063564..1063734 (-) 171 WP_005613503.1 50S ribosomal protein L33 -
  BV121_RS05390 (BV121_1093) rpmB 1063746..1063982 (-) 237 WP_005542826.1 50S ribosomal protein L28 -
  BV121_RS05395 (BV121_1094) radC 1064196..1064861 (-) 666 WP_013526173.1 RadC family protein Machinery gene
  BV121_RS05400 (BV121_1095) coaBC 1065024..1066226 (+) 1203 WP_011272308.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  BV121_RS05405 (BV121_1096) dut 1066274..1066729 (+) 456 WP_005631431.1 dUTP diphosphatase -
  BV121_RS05410 (BV121_1097) slmA 1066733..1067389 (+) 657 WP_005648000.1 nucleoid occlusion factor SlmA -
  BV121_RS05415 (BV121_1098) - 1067411..1067662 (+) 252 WP_005647999.1 YheU family protein -
  BV121_RS05420 (BV121_1099) crp 1067647..1068321 (+) 675 WP_005647998.1 cAMP-activated global transcriptional regulator CRP Regulator

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25057.34 Da        Isoelectric Point: 6.3797

>NTDB_id=183103 BV121_RS05395 WP_013526173.1 1064196..1064861(-) (radC) [Haemophilus influenzae strain 5P28H1]
MENNDELMPREKLLAFGAKALSDYELLAIFLRTGIKDCPVMSLSKNVLTHFGSLHALLSADKKAFCSVKGLGITQFIQLQ
AITEMTKRYLKQEMLSTPIINDLETVKLFLLTELQHEEREVFMVLFLDNQHRLIKKERLFLGTINVSAVYPREIIKEALY
CNAAALILAHNHPSGITEPSYSDQLITKKIQDAAELMEIRVLDHLIVGKSDCYSFAENCLL

Nucleotide


Download         Length: 666 bp        

>NTDB_id=183103 BV121_RS05395 WP_013526173.1 1064196..1064861(-) (radC) [Haemophilus influenzae strain 5P28H1]
ATGGAAAACAATGATGAATTAATGCCACGGGAAAAATTGCTGGCATTCGGAGCAAAAGCATTAAGTGATTATGAACTACT
TGCGATTTTTTTACGTACTGGTATCAAAGATTGTCCTGTTATGTCACTTTCTAAAAATGTATTAACGCATTTTGGCTCCT
TGCACGCTTTACTTTCCGCAGATAAAAAAGCTTTCTGTTCTGTAAAAGGCTTAGGTATTACGCAATTTATTCAACTGCAA
GCGATTACGGAAATGACCAAGCGTTATTTAAAGCAAGAGATGTTAAGTACGCCGATTATTAATGATCTTGAAACGGTAAA
ACTTTTTTTACTCACTGAATTGCAACACGAGGAAAGAGAAGTATTTATGGTTTTATTTTTAGATAATCAACATCGTTTGA
TTAAAAAAGAGCGGTTATTTTTAGGTACAATTAATGTATCAGCGGTTTATCCGCGAGAAATTATTAAAGAAGCACTCTAT
TGTAATGCGGCAGCTTTAATTTTGGCACATAATCATCCTTCAGGTATAACGGAGCCGAGTTATTCGGATCAACTTATTAC
TAAAAAAATTCAAGATGCGGCTGAACTAATGGAAATTCGCGTGCTTGATCATTTAATTGTAGGGAAAAGCGATTGTTATT
CTTTCGCGGAGAATTGTTTATTATAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(102-218)

UPF0758 N-terminal (UPF0758_N)

(8-74)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q4QLV5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

97.738

100

0.977
  radC Streptococcus pneumoniae TIGR4

38.14

97.285

0.371
  radC Streptococcus pneumoniae R6

37.674

97.285

0.367
  radC Streptococcus pneumoniae D39

37.674

97.285

0.367

Multiple sequence alignment