Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   BZY78_RS14550 Genome accession   NZ_CP019560
Coordinates   2800719..2801351 (+) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain KSC1031     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2795719..2806351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BZY78_RS14520 (BZY78_14750) yheS 2795888..2797801 (+) 1914 WP_000634798.1 ABC transporter ATP-binding protein -
  BZY78_RS14525 (BZY78_14755) yheT 2797801..2798823 (+) 1023 WP_000057405.1 hydrolase -
  BZY78_RS14530 (BZY78_14760) yheU 2798817..2799035 (+) 219 WP_000907085.1 YheU family protein -
  BZY78_RS14535 (BZY78_14765) prkB 2799089..2799958 (+) 870 WP_087548893.1 phosphoribulokinase -
  BZY78_RS14540 (BZY78_14770) yhfA 2800013..2800417 (-) 405 WP_001148908.1 OsmC family protein -
  BZY78_RS14550 (BZY78_14780) crp 2800719..2801351 (+) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  BZY78_RS14555 (BZY78_14785) yhfK 2801402..2803492 (+) 2091 WP_001356072.1 YccS/YhfK family putative transporter -
  BZY78_RS14560 (BZY78_14790) argD 2803559..2804779 (-) 1221 WP_000963792.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  BZY78_RS14565 (BZY78_14795) pabA 2804865..2805428 (-) 564 WP_000601850.1 aminodeoxychorismate synthase component 2 -
  BZY78_RS14570 (BZY78_14800) fic 2805460..2806062 (-) 603 WP_001280624.1 putative adenosine monophosphate-protein transferase Fic -
  BZY78_RS14575 (BZY78_14805) yhfG 2806052..2806219 (-) 168 WP_000736860.1 YhfG family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=180853 BZY78_RS14550 WP_000242755.1 2800719..2801351(+) (crp) [Escherichia coli strain KSC1031]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=180853 BZY78_RS14550 WP_000242755.1 2800719..2801351(+) (crp) [Escherichia coli strain KSC1031]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTAACGGGCCGCATTGCACAGACTCTGCTGAACCTGGCAAAACAACCAGATGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATCGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467