Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   BZY78_RS10750 Genome accession   NZ_CP019560
Coordinates   2079095..2079610 (-) Length   171 a.a.
NCBI ID   WP_001130210.1    Uniprot ID   B6I678
Organism   Escherichia coli strain KSC1031     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2074095..2084610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BZY78_RS10725 (BZY78_10895) ygaZ 2074494..2075231 (+) 738 WP_000445651.1 L-valine exporter subunit YgaZ -
  BZY78_RS10730 (BZY78_10900) ygaH 2075221..2075556 (+) 336 WP_000119749.1 L-valine transporter subunit YgaH -
  BZY78_RS10735 (BZY78_10905) emrR 2075647..2076177 (+) 531 WP_000378435.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  BZY78_RS10740 (BZY78_10910) emrA 2076304..2077476 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  BZY78_RS10745 (BZY78_10915) emrB 2077493..2079031 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  BZY78_RS10750 (BZY78_10920) luxS 2079095..2079610 (-) 516 WP_001130210.1 S-ribosylhomocysteine lyase Regulator
  BZY78_RS10755 (BZY78_10925) gshA 2079760..2081316 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  BZY78_RS10760 (BZY78_10930) yqaA 2081389..2081817 (-) 429 WP_001287454.1 YqaA family protein -
  BZY78_RS10765 (BZY78_10935) yqaB 2081814..2082380 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  BZY78_RS10795 (BZY78_10965) csrA 2083838..2084023 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19417.13 Da        Isoelectric Point: 4.7556

>NTDB_id=180838 BZY78_RS10750 WP_001130210.1 2079095..2079610(-) (luxS) [Escherichia coli strain KSC1031]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPEEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=180838 BZY78_RS10750 WP_001130210.1 2079095..2079610(-) (luxS) [Escherichia coli strain KSC1031]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGGAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B6I678

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737