Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   BWI83_RS14025 Genome accession   NZ_CP019245
Coordinates   2744721..2745236 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain Combat13F7     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2739721..2750236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BWI83_RS13980 (BWI83_13975) csrA 2740308..2740493 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  BWI83_RS14010 (BWI83_14005) yqaB 2741951..2742517 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  BWI83_RS14015 (BWI83_14010) yqaA 2742514..2742942 (+) 429 WP_001287454.1 YqaA family protein -
  BWI83_RS14020 (BWI83_14015) gshA 2743015..2744571 (+) 1557 WP_023281437.1 glutamate--cysteine ligase -
  BWI83_RS14025 (BWI83_14020) luxS 2744721..2745236 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  BWI83_RS14030 (BWI83_14025) emrB 2745300..2746838 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  BWI83_RS14035 (BWI83_14030) emrA 2746855..2748027 (-) 1173 WP_001326681.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  BWI83_RS14040 (BWI83_14035) emrR 2748154..2748684 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  BWI83_RS14045 (BWI83_14040) ygaH 2748775..2749110 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  BWI83_RS14050 (BWI83_14045) ygaZ 2749100..2749837 (-) 738 WP_000445651.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=179130 BWI83_RS14025 WP_001130211.1 2744721..2745236(+) (luxS) [Escherichia coli strain Combat13F7]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=179130 BWI83_RS14025 WP_001130211.1 2744721..2745236(+) (luxS) [Escherichia coli strain Combat13F7]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731