NTDB

Overview

Name	radC	Type	Machinery gene
Locus tag	BTV17_RS00785	Genome accession	NZ_CP018806
Coordinates	143328..143996 (+)	Length	222 a.a.
NCBI ID	WP_011608296.1	Uniprot ID	B0UUW7
Organism	Histophilus somni strain USDA-ARS-USMARC-63370
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 138328..148996

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BTV17_RS00755 (BTV17_00755)	recF	138769..139845 (+)	1077	WP_075293535.1	DNA replication/repair protein RecF	-
BTV17_RS00760 (BTV17_00760)	crp	139902..140546 (-)	645	WP_011608291.1	cAMP-activated global transcriptional regulator CRP	Regulator
BTV17_RS00765 (BTV17_00765)	-	140559..140783 (-)	225	WP_012341336.1	YheU family protein	-
BTV17_RS00770 (BTV17_00770)	slmA	140818..141477 (-)	660	WP_011608293.1	nucleoid occlusion factor SlmA	-
BTV17_RS00775 (BTV17_00775)	dut	141477..141932 (-)	456	WP_011608294.1	dUTP diphosphatase	-
BTV17_RS00780 (BTV17_00780)	coaBC	141929..143155 (-)	1227	WP_075293534.1	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	-
BTV17_RS00785 (BTV17_00785)	radC	143328..143996 (+)	669	WP_011608296.1	RadC family protein	Machinery gene
BTV17_RS00790 (BTV17_00790)	rpmB	144217..144453 (+)	237	WP_011608297.1	50S ribosomal protein L28	-
BTV17_RS00795 (BTV17_00795)	rpmG	144465..144635 (+)	171	WP_005542835.1	50S ribosomal protein L33	-
BTV17_RS00800 (BTV17_00800)	mutM	144741..145553 (+)	813	WP_075293533.1	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	-
BTV17_RS00805 (BTV17_00805)	ilvG	145645..147321 (+)	1677	WP_012340456.1	acetolactate synthase 2 catalytic subunit	-
BTV17_RS00810 (BTV17_00810)	ilvM	147325..147543 (+)	219	WP_011608300.1	acetolactate synthase 2 small subunit	-
BTV17_RS00815 (BTV17_00815)	-	147609..148271 (+)	663	WP_075293532.1	MOSC domain-containing protein	-
BTV17_RS00820 (BTV17_00820)	-	148388..148891 (+)	504	WP_011608302.1	chorismate--pyruvate lyase family protein	-

Sequence

Protein

Download Length: 222 a.a. Molecular weight: 25553.76 Da Isoelectric Point: 7.3730

                                >NTDB_id=175980 BTV17_RS00785 WP_011608296.1 143328..143996(+) (radC) [Histophilus somni strain USDA-ARS-USMARC-63370]

MTQQNTTLMPREKLLKYGASSLDDKELLAIFLRTGIKNCPVMQLSELVLAHFSSLRGLINADQKHFCQMKGLGITQFVQL

QACTEMTKRYLLQELQFAQEFTSPDTVRMYLQTELENKDREIFMVLFLDNQHRLIKKEEMFLGTINQANVYPREIIKTAL

FCNAAALILAHNHPSGVSTPSMADRKMTENIKQLSELMEIRVLDHFIIGKGNYFSFAEQGWI

Nucleotide

Download Length: 669 bp

                                >NTDB_id=175980 BTV17_RS00785 WP_011608296.1 143328..143996(+) (radC) [Histophilus somni strain USDA-ARS-USMARC-63370]

ATGACACAACAAAATACAACTTTAATGCCGAGAGAAAAACTACTGAAATATGGAGCTTCATCACTTGATGATAAGGAATT

ATTAGCGATTTTCTTACGTACAGGTATAAAAAATTGTCCTGTTATGCAACTCTCCGAGTTGGTACTTGCTCATTTTTCTT

CTTTAAGAGGATTAATTAATGCAGATCAAAAGCATTTTTGCCAAATGAAAGGATTGGGTATTACTCAATTTGTACAATTA

CAAGCCTGTACTGAAATGACCAAACGTTATCTCTTACAAGAATTACAGTTTGCACAAGAATTTACCAGCCCTGATACGGT

TCGTATGTATTTACAGACTGAATTAGAAAATAAAGATAGAGAAATTTTTATGGTACTGTTTTTGGATAATCAACATCGTT

TAATAAAAAAAGAGGAAATGTTTTTAGGTACCATTAACCAGGCAAATGTTTATCCTCGTGAGATTATTAAAACCGCACTA

TTTTGTAATGCAGCCGCACTTATTCTTGCACATAATCATCCTTCCGGTGTTTCAACGCCAAGCATGGCAGACAGAAAAAT

GACCGAGAATATAAAACAACTATCAGAATTAATGGAAATCCGTGTTTTAGATCATTTTATCATTGGTAAAGGTAACTATT

TCTCCTTTGCAGAACAAGGCTGGATCTAG

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(101-220)

UPF0758 N-terminal (UPF0758_N)

(8-75)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	B0UUW7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
radC	Haemophilus influenzae Rd KW20	64.815	97.297	0.631

Detailed information NTG0175980